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Zall warning
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README.md

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@@ -1495,15 +1495,13 @@ It holds
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- `Zall(--model=S) <= Zall(--model=P)` as well as
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- `Zall(--mode=H --model=P) <= Zall(--mode=M --model=P)`.
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BUT: the seed-extension strategy in `--model=X` does not allow for correct `Zall` computation in exact mfe prediction mode (`--mode=M`).
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- **BEWARE in seed-extension models:** `Eall(--mode=M --model=X)` might be higher than `E(--mode=M --model=X)`, since in this mode **`Zall` does not consider all structures to avoid duplicated counts!** Thus, avoid `Eall` or `Zall` output in this mode!
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Thus, most accurate results are computed using
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```
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IntaRNA --model=P --mode=M --outMode=E ...
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```
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BUT: the **seed-extension strategy in `--model=X` does not allow for correct `Zall` computation**. Thus, avoid `Eall` or `Zall` output in this mode!
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[![up](doc/figures/icon-up.28.png) back to overview](#overview)
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