Merge pull request #16 from BlueBrain/update-tox

Update ci, add python3.12, codecov@v4

Author: eleftherioszisis

.github/workflows/run-tox.yml

@@ -11,7 +11,7 @@ jobs:
     runs-on: ubuntu-latest
     strategy:
       matrix:
-        python-version: ['3.8', '3.9', '3.10', '3.11']
+        python-version: ['3.8', '3.9', '3.10', '3.11', '3.12']
     steps:
     - uses: actions/checkout@v3
     - name: Set up Python ${{ matrix.python-version }}
@@ -26,10 +26,10 @@ jobs:
       run: |
         tox
     - name: Upload to codecov
-      if: ${{matrix.python-version == '3.10'}}
-      uses: codecov/codecov-action@v1
+      uses: codecov/codecov-action@v4
       with:
         fail_ci_if_error: false
         files: ./coverage.xml
         flags: pytest
-        name: "vascpy-py310"
+        name: "vascpy-py${{ matrix.python-version }}"
+        token: ${{ secrets.CODECOV_TOKEN }}

tox.ini

@@ -2,19 +2,28 @@
 name = vascpy
 testdeps =
     pytest
+    pytest-cov
 
 [tox]
 minversion = 3.1.0
 envlist =
-    py{38,39,310,311}
-    py310-lint
-    py310-coverage
+    py{38,39,310,311,312}
+    docs
+    lint
+    format
 ignore_basepython_conflict = true
 
 [testenv]
 extras = all
 deps = {[base]testdeps}
-commands = py.test {posargs}  tests
+commands = pytest \
+    --cov={envsitepackagesdir}/{[base]name} \
+    --cov-report term-missing \
+    --cov-fail-under=100 \
+    --cov-report=xml \
+    --no-cov-on-fail \
+    --cov-fail-under=95 \
+    {posargs}
 
 [testenv:format]
 deps =
@@ -24,7 +33,7 @@ commands =
     isort -l 100 --profile black {[base]name} tests setup.py
     black -l 100 {[base]name} tests setup.py
 
-[testenv:py310-lint]
+[testenv:lint]
 deps =
     mypy
     isort
@@ -39,25 +48,13 @@ commands =
     pycodestyle {[base]name}
     pylint -j2 --ignored-modules=vtk {[base]name}
 
-[testenv:py310-coverage]
-deps =
-    {[base]testdeps}
-    pytest-cov
-commands =
-    pytest \
-    --cov-report term-missing \
-    --cov-report xml \
-    --cov-report html \
-    --cov={envsitepackagesdir}/{[base]name} \
-    tests/
-
-[testenv:py39-docs]
+[testenv:docs]
 changedir = doc
 extras = docs
 commands =
     make clean
     make html SPHINXOPTS=-W
-whitelist_externals =
+allowlist_externals =
     make
     rm
 
@@ -73,8 +70,8 @@ max-line-length = 100
 
 [gh-actions]
 python =
-    3.7 : py37
-    3.8 : py38
+    3.8 : py38, lint
     3.9 : py39
     3.10: py310
-    3.11: py311
+    3.11: py311, docs
+    3.12: py312