Merge pull request #1131 from CliMA/js/v012

tag v0.1.2

Author: juliasloan25

NEWS.md

@@ -4,12 +4,15 @@ ClimaCoupler.jl Release Notes
 `main`
 -------
 
+
+v0.1.2
+-------
 ### ClimaEarth features
 
 ### Read bucket initial conditions from NetCDF files
 
 Added functionality to allow the bucket initial conditions to be overwritten by interpolated NetCDF datasets.
-To use this feature from the YAML interface, just pass the path of the file to `land_initial_condition`. 
+To use this feature from the YAML interface, just pass the path of the file to `land_initial_condition`.
 We expect the file to contain the following variables:
 `W`, for subsurface water storage (2D),
 `Ws`, for surface water content (2D),

Project.toml

@@ -1,7 +1,7 @@
 name = "ClimaCoupler"
 uuid = "4ade58fe-a8da-486c-bd89-46df092ec0c7"
 authors = ["CliMA Contributors <[email protected]>"]
-version = "0.1.1"
+version = "0.1.2"
 
 [deps]
 ClimaComms = "3a4d1b5c-c61d-41fd-a00a-5873ba7a1b0d"

experiments/ClimaCore/Manifest-v1.11.toml

@@ -169,9 +169,9 @@ version = "0.4.7"
 
 [[deps.BandedMatrices]]
 deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "PrecompileTools"]
-git-tree-sha1 = "2a81cc8adf470ac6bd87eef3ca3d194d08a8754c"
+git-tree-sha1 = "fc8d8197de6c69ad6fd01c255b6b386ca8199331"
 uuid = "aae01518-5342-5314-be14-df237901396f"
-version = "1.8.0"
+version = "1.9.0"
 weakdeps = ["SparseArrays"]
 
     [deps.BandedMatrices.extensions]
@@ -295,7 +295,7 @@ version = "0.4.6"
 deps = ["ClimaComms", "ClimaCore", "ClimaUtilities", "Dates", "Logging", "SciMLBase", "StaticArrays", "SurfaceFluxes", "Thermodynamics"]
 path = "../.."
 uuid = "4ade58fe-a8da-486c-bd89-46df092ec0c7"
-version = "0.1.1"
+version = "0.1.2"
 
 [[deps.ClimaTimeSteppers]]
 deps = ["ClimaComms", "Colors", "DataStructures", "DiffEqBase", "KernelAbstractions", "Krylov", "LinearAlgebra", "LinearOperators", "NVTX", "SciMLBase", "StaticArrays"]
@@ -583,9 +583,9 @@ version = "1.11.0"
 
 [[deps.Distributions]]
 deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"]
-git-tree-sha1 = "9d9e93d19c912ee6f0f3543af0d8839079dbd0d7"
+git-tree-sha1 = "4b138e4643b577ccf355377c2bc70fa975af25de"
 uuid = "31c24e10-a181-5473-b8eb-7969acd0382f"
-version = "0.25.114"
+version = "0.25.115"
 
     [deps.Distributions.extensions]
     DistributionsChainRulesCoreExt = "ChainRulesCore"
@@ -809,9 +809,9 @@ version = "0.10.6"
 
 [[deps.FriBidi_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
-git-tree-sha1 = "1ed150b39aebcc805c26b93a8d0122c940f64ce2"
+git-tree-sha1 = "846f7026a9decf3679419122b49f8a1fdb48d2d5"
 uuid = "559328eb-81f9-559d-9380-de523a88c83c"
-version = "1.0.14+0"
+version = "1.0.16+0"
 
 [[deps.FunctionWrappers]]
 git-tree-sha1 = "d62485945ce5ae9c0c48f124a84998d755bae00e"
@@ -883,9 +883,9 @@ version = "0.1.0"
 
 [[deps.Glib_jll]]
 deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"]
-git-tree-sha1 = "48b5d4c75b2c9078ead62e345966fa51a25c05ad"
+git-tree-sha1 = "b0036b392358c80d2d2124746c2bf3d48d457938"
 uuid = "7746bdde-850d-59dc-9ae8-88ece973131d"
-version = "2.82.2+1"
+version = "2.82.4+0"
 
 [[deps.Graphics]]
 deps = ["Colors", "LinearAlgebra", "NaNMath"]
@@ -1086,9 +1086,9 @@ version = "0.1.5"
 
 [[deps.JpegTurbo_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
-git-tree-sha1 = "25ee0be4d43d0269027024d75a24c24d6c6e590c"
+git-tree-sha1 = "ef10afc9f4b942bcd75f4c3bc9d9e8d802944c23"
 uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8"
-version = "3.0.4+0"
+version = "3.1.0+0"
 
 [[deps.JuliaNVTXCallbacks_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
@@ -1206,9 +1206,9 @@ version = "1.11.0"
 
 [[deps.Libffi_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
-git-tree-sha1 = "0b4a5d71f3e5200a7dff793393e09dfc2d874290"
+git-tree-sha1 = "27ecae93dd25ee0909666e6835051dd684cc035e"
 uuid = "e9f186c6-92d2-5b65-8a66-fee21dc1b490"
-version = "3.2.2+1"
+version = "3.2.2+2"
 
 [[deps.Libgcrypt_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgpg_error_jll"]
@@ -1224,9 +1224,9 @@ version = "1.7.0+0"
 
 [[deps.Libgpg_error_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
-git-tree-sha1 = "c6ce1e19f3aec9b59186bdf06cdf3c4fc5f5f3e6"
+git-tree-sha1 = "a7f43994b47130e4f491c3b2dbe78fe9e2aed2b3"
 uuid = "7add5ba3-2f88-524e-9cd5-f83b8a55f7b8"
-version = "1.50.0+0"
+version = "1.51.0+0"
 
 [[deps.Libiconv_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
@@ -1443,9 +1443,9 @@ uuid = "510215fc-4207-5dde-b226-833fc4488ee2"
 version = "0.5.5"
 
 [[deps.OffsetArrays]]
-git-tree-sha1 = "39d000d9c33706b8364817d8894fae1548f40295"
+git-tree-sha1 = "5e1897147d1ff8d98883cda2be2187dcf57d8f0c"
 uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881"
-version = "1.14.2"
+version = "1.15.0"
 weakdeps = ["Adapt"]
 
     [deps.OffsetArrays.extensions]
@@ -1545,9 +1545,9 @@ version = "0.5.12"
 
 [[deps.Pango_jll]]
 deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "FriBidi_jll", "Glib_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl"]
-git-tree-sha1 = "e127b609fb9ecba6f201ba7ab753d5a605d53801"
+git-tree-sha1 = "ed6834e95bd326c52d5675b4181386dfbe885afb"
 uuid = "36c8627f-9965-5494-a995-c6b170f724f3"
-version = "1.54.1+0"
+version = "1.55.5+0"
 
 [[deps.Parameters]]
 deps = ["OrderedCollections", "UnPack"]
@@ -2071,15 +2071,22 @@ version = "1.10.0"
 
 [[deps.TaylorSeries]]
 deps = ["LinearAlgebra", "Markdown", "Requires", "SparseArrays"]
-git-tree-sha1 = "abc13c4d3cccd1703335ba03abdaf0dc8ecc97e2"
+git-tree-sha1 = "90c9bc500f4c5cdd235c81503ec91b2048f06423"
 uuid = "6aa5eb33-94cf-58f4-a9d0-e4b2c4fc25ea"
-version = "0.17.3"
-weakdeps = ["IntervalArithmetic", "StaticArrays"]
+version = "0.17.8"
 
     [deps.TaylorSeries.extensions]
     TaylorSeriesIAExt = "IntervalArithmetic"
+    TaylorSeriesJLD2Ext = "JLD2"
+    TaylorSeriesRATExt = "RecursiveArrayTools"
     TaylorSeriesSAExt = "StaticArrays"
 
+    [deps.TaylorSeries.weakdeps]
+    IntervalArithmetic = "d1acc4aa-44c8-5952-acd4-ba5d80a2a253"
+    JLD2 = "033835bb-8acc-5ee8-8aae-3f567f8a3819"
+    RecursiveArrayTools = "731186ca-8d62-57ce-b412-fbd966d074cd"
+    StaticArrays = "90137ffa-7385-5640-81b9-e52037218182"
+
 [[deps.TensorCore]]
 deps = ["LinearAlgebra"]
 git-tree-sha1 = "1feb45f88d133a655e001435632f019a9a1bcdb6"
@@ -2111,9 +2118,9 @@ version = "0.5.2"
 
 [[deps.TiffImages]]
 deps = ["ColorTypes", "DataStructures", "DocStringExtensions", "FileIO", "FixedPointNumbers", "IndirectArrays", "Inflate", "Mmap", "OffsetArrays", "PkgVersion", "ProgressMeter", "SIMD", "UUIDs"]
-git-tree-sha1 = "0248b1b2210285652fbc67fd6ced9bf0394bcfec"
+git-tree-sha1 = "3c0faa42f2bd3c6d994b06286bba2328eae34027"
 uuid = "731e570b-9d59-4bfa-96dc-6df516fadf69"
-version = "0.11.1"
+version = "0.11.2"
 
 [[deps.TimerOutputs]]
 deps = ["ExprTools", "Printf"]

experiments/ClimaCore/Manifest.toml

@@ -168,9 +168,9 @@ version = "0.4.7"
 
 [[deps.BandedMatrices]]
 deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "PrecompileTools"]
-git-tree-sha1 = "2a81cc8adf470ac6bd87eef3ca3d194d08a8754c"
+git-tree-sha1 = "fc8d8197de6c69ad6fd01c255b6b386ca8199331"
 uuid = "aae01518-5342-5314-be14-df237901396f"
-version = "1.8.0"
+version = "1.9.0"
 weakdeps = ["SparseArrays"]
 
     [deps.BandedMatrices.extensions]
@@ -292,7 +292,7 @@ version = "0.4.6"
 deps = ["ClimaComms", "ClimaCore", "ClimaUtilities", "Dates", "Logging", "SciMLBase", "StaticArrays", "SurfaceFluxes", "Thermodynamics"]
 path = "../.."
 uuid = "4ade58fe-a8da-486c-bd89-46df092ec0c7"
-version = "0.1.1"
+version = "0.1.2"
 
 [[deps.ClimaTimeSteppers]]
 deps = ["ClimaComms", "Colors", "DataStructures", "DiffEqBase", "KernelAbstractions", "Krylov", "LinearAlgebra", "LinearOperators", "NVTX", "SciMLBase", "StaticArrays"]
@@ -578,9 +578,9 @@ uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b"
 
 [[deps.Distributions]]
 deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"]
-git-tree-sha1 = "9d9e93d19c912ee6f0f3543af0d8839079dbd0d7"
+git-tree-sha1 = "4b138e4643b577ccf355377c2bc70fa975af25de"
 uuid = "31c24e10-a181-5473-b8eb-7969acd0382f"
-version = "0.25.114"
+version = "0.25.115"
 
     [deps.Distributions.extensions]
     DistributionsChainRulesCoreExt = "ChainRulesCore"
@@ -803,9 +803,9 @@ version = "0.10.6"
 
 [[deps.FriBidi_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
-git-tree-sha1 = "1ed150b39aebcc805c26b93a8d0122c940f64ce2"
+git-tree-sha1 = "846f7026a9decf3679419122b49f8a1fdb48d2d5"
 uuid = "559328eb-81f9-559d-9380-de523a88c83c"
-version = "1.0.14+0"
+version = "1.0.16+0"
 
 [[deps.FunctionWrappers]]
 git-tree-sha1 = "d62485945ce5ae9c0c48f124a84998d755bae00e"
@@ -876,9 +876,9 @@ version = "0.1.0"
 
 [[deps.Glib_jll]]
 deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"]
-git-tree-sha1 = "48b5d4c75b2c9078ead62e345966fa51a25c05ad"
+git-tree-sha1 = "b0036b392358c80d2d2124746c2bf3d48d457938"
 uuid = "7746bdde-850d-59dc-9ae8-88ece973131d"
-version = "2.82.2+1"
+version = "2.82.4+0"
 
 [[deps.Graphics]]
 deps = ["Colors", "LinearAlgebra", "NaNMath"]
@@ -1078,9 +1078,9 @@ version = "0.1.5"
 
 [[deps.JpegTurbo_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
-git-tree-sha1 = "25ee0be4d43d0269027024d75a24c24d6c6e590c"
+git-tree-sha1 = "ef10afc9f4b942bcd75f4c3bc9d9e8d802944c23"
 uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8"
-version = "3.0.4+0"
+version = "3.1.0+0"
 
 [[deps.JuliaNVTXCallbacks_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
@@ -1195,9 +1195,9 @@ uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb"
 
 [[deps.Libffi_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
-git-tree-sha1 = "0b4a5d71f3e5200a7dff793393e09dfc2d874290"
+git-tree-sha1 = "27ecae93dd25ee0909666e6835051dd684cc035e"
 uuid = "e9f186c6-92d2-5b65-8a66-fee21dc1b490"
-version = "3.2.2+1"
+version = "3.2.2+2"
 
 [[deps.Libgcrypt_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgpg_error_jll"]
@@ -1213,9 +1213,9 @@ version = "1.7.0+0"
 
 [[deps.Libgpg_error_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
-git-tree-sha1 = "c6ce1e19f3aec9b59186bdf06cdf3c4fc5f5f3e6"
+git-tree-sha1 = "a7f43994b47130e4f491c3b2dbe78fe9e2aed2b3"
 uuid = "7add5ba3-2f88-524e-9cd5-f83b8a55f7b8"
-version = "1.50.0+0"
+version = "1.51.0+0"
 
 [[deps.Libiconv_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
@@ -1428,9 +1428,9 @@ uuid = "510215fc-4207-5dde-b226-833fc4488ee2"
 version = "0.5.5"
 
 [[deps.OffsetArrays]]
-git-tree-sha1 = "39d000d9c33706b8364817d8894fae1548f40295"
+git-tree-sha1 = "5e1897147d1ff8d98883cda2be2187dcf57d8f0c"
 uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881"
-version = "1.14.2"
+version = "1.15.0"
 weakdeps = ["Adapt"]
 
     [deps.OffsetArrays.extensions]
@@ -1530,9 +1530,9 @@ version = "0.5.12"
 
 [[deps.Pango_jll]]
 deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "FriBidi_jll", "Glib_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl"]
-git-tree-sha1 = "e127b609fb9ecba6f201ba7ab753d5a605d53801"
+git-tree-sha1 = "ed6834e95bd326c52d5675b4181386dfbe885afb"
 uuid = "36c8627f-9965-5494-a995-c6b170f724f3"
-version = "1.54.1+0"
+version = "1.55.5+0"
 
 [[deps.Parameters]]
 deps = ["OrderedCollections", "UnPack"]
@@ -2037,15 +2037,22 @@ version = "1.10.0"
 
 [[deps.TaylorSeries]]
 deps = ["LinearAlgebra", "Markdown", "Requires", "SparseArrays"]
-git-tree-sha1 = "abc13c4d3cccd1703335ba03abdaf0dc8ecc97e2"
+git-tree-sha1 = "90c9bc500f4c5cdd235c81503ec91b2048f06423"
 uuid = "6aa5eb33-94cf-58f4-a9d0-e4b2c4fc25ea"
-version = "0.17.3"
-weakdeps = ["IntervalArithmetic", "StaticArrays"]
+version = "0.17.8"
 
     [deps.TaylorSeries.extensions]
     TaylorSeriesIAExt = "IntervalArithmetic"
+    TaylorSeriesJLD2Ext = "JLD2"
+    TaylorSeriesRATExt = "RecursiveArrayTools"
     TaylorSeriesSAExt = "StaticArrays"
 
+    [deps.TaylorSeries.weakdeps]
+    IntervalArithmetic = "d1acc4aa-44c8-5952-acd4-ba5d80a2a253"
+    JLD2 = "033835bb-8acc-5ee8-8aae-3f567f8a3819"
+    RecursiveArrayTools = "731186ca-8d62-57ce-b412-fbd966d074cd"
+    StaticArrays = "90137ffa-7385-5640-81b9-e52037218182"
+
 [[deps.TensorCore]]
 deps = ["LinearAlgebra"]
 git-tree-sha1 = "1feb45f88d133a655e001435632f019a9a1bcdb6"
@@ -2076,9 +2083,9 @@ version = "0.5.2"
 
 [[deps.TiffImages]]
 deps = ["ColorTypes", "DataStructures", "DocStringExtensions", "FileIO", "FixedPointNumbers", "IndirectArrays", "Inflate", "Mmap", "OffsetArrays", "PkgVersion", "ProgressMeter", "SIMD", "UUIDs"]
-git-tree-sha1 = "0248b1b2210285652fbc67fd6ced9bf0394bcfec"
+git-tree-sha1 = "3c0faa42f2bd3c6d994b06286bba2328eae34027"
 uuid = "731e570b-9d59-4bfa-96dc-6df516fadf69"
-version = "0.11.1"
+version = "0.11.2"
 
 [[deps.TimerOutputs]]
 deps = ["ExprTools", "Printf"]