call rate and p10 gc difference

[cmccabe0728]

Hello,

The Call Rate and p10 GC is a little different on the same sample:

Analyzed in GenomeStudio
Call Rate = 0.9973016 p10GC = 0.4016

BeadArrayFiles-1.3.4
Call Rate = 0.9839280401547069 and 10%_GC_Score = 0.3711

I found this note in the repo and think it may be the reason.... has this been resolved with a flag used in the command? Thanks.

NOTE: For the DNA summary report, it does not exclude zeroed loci from the cluster file as it does in Genome Studio, so overall call rates may look lower. There is an open issue to address this: #22

python3 gtc_final_report.py ${bpm} ${run_dir}/${run} ${run_dir}/${run}_gtc.txt

[jzieve]

No it hasn't been implemented/resolved. Feel free to put in a pull request, I can review it.