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pipelines/fq2sortedbam/README.md

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@@ -28,7 +28,7 @@ Setup \<inputdir\>/config.yaml (described below) with appropriate values
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### Docker run:
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```
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docker load -i fq2bam.tar ## optional, if the image is build on the same machine or is already loaded
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docker run -v <inputdir>:/input <outdir>:/out <refdir>:/refdir <tempdir>:/tempdir fq2bam:latest bash run_bwa.sh sortedbam /input/config.yaml
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docker run -v <inputdir>:/input -v <outdir>:/out -v <refdir>:/refdir -v <tempdir>:/tempdir fq2bam:latest bash run_bwa.sh sortedbam /input/config.yaml
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```
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Note:
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\<inputdir\>: Location of the local directory containing read files read1 & read2

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