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MontpellierRessourcesImagerie / imagej_macros_and_scripts Public

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Volker edited this page May 11, 2021 · 33 revisions

MRI ImageJ-macros

ImageJ Macro Tool Sets for Biological Image Analysis

MRI-macro-toolsets
macros
scripts
Publications using MRI-ImageJ-macros
How-to
TI
Training, Resources and Links

Volker Bäcker ORCID iD icon

Clément Benedetti

Toggle table of contents Pages 81

Home
- MRI ImageJ-macros
- ImageJ Macro Tool Sets for Biological Image Analysis
3D_Nuclei_Clustering_Tool
Adipocytes Tools
Analyse Spots Per Protoplast
Analyze Spheroid Cell Invasion In 3D Matrix
Analyze_Calcium_Signals_In_Spines
Analyze_Cardiomyocytes
Analyze_Complex_Roots_Tool
Arabidopsis Seedlings Tool
Automatic_Scale_Spot_Detection_Tool
Cluster Analysis of Nuclei Tool
Cochlea Hair Cell Counting
Cochlea_Tools
Copy_Random_Data_Tool
Count Axonal Projections Tool
Count_Satellites_Tool
Count_Spines_On_Dendrite
Discrete Histogram Entropy
Discrete_Histogram_Entropy_Tool
Distance_Between_Minima_Tool
Export series from multi‐series images
Filament_Morphology_Tool
Filament_Tools
Find_and_Subtract_Background_Tool
FLIM FRET_Volume_Tool
Foci Per Nucleus Tool
Growth_Cone_Visualizer
How to
Image_Conversion_Tools
Incucyte_Exporter
Intensity Per Nucleus Tool
Intensity Ratio Nuclei Cytoplasm Tool
Lipid Droplets Tool
Load Corresponding Images
macros
Measure Intensity Without Spots
Measure_Border_And_Spots_Tool
Measure_Nuclei_And_Membranes_Tool
Measure_Rois
MRI_Analyze_Alignment_of_Muscles_Tool
MRI_Analyze_Comets_Tool
MRI_Convert_Nikon_Andor_To_Hyperstack
MRI_Convert_Opera_To_Hyperstack
MRI_Count_Spot_Populations_Tool
MRI_Create_Synthetic_Spots_Tool
MRI_DoG_Filter
MRI_Dynamic_Zones_Analyzer
MRI_Fibrosis_Tool
MRI_g_ratio_Tools
MRI_Heights_of_Surfaces_Tools
MRI_ND_To_Hyperstack
MRI_Neurite_Analyzer
MRI_Opera_export_tools
MRI_Plot_Tool
MRI_Random_Selection_From_Table_Tool
MRI_Root_Hair_Tools
MRI_Spiral_Mosaic_Tool
MRI_Spot_Coloc_Tool
MuVi SPIM_Convert_Tools
ND_2_AVI
NDPI_Export_Regions_Tool
Nuclei segmentation & tracking tools
Opera_Wellnames_from_CSV
Phase Contrast Cell Analysis Tool (Trainable WEKA Segmentation)
Publications using MRI ImageJ macros
Radial_Movement_Tool
Segmentation of mitotic spindles
Skin Tools
Spine Analyzer
Spot_Distances_Tool
Synthetic_Tracking_Data_Generator
TI
Time_Reverse_Hyperstack_Tool
Track_Microtubules_Tool
Tracks2Rois
Training, Resources and Links
Transfection_Efficiency_Tool
Width Profile Tools
Witness_based_drift_correction_Tool
Wound Healing Coherency Tool
Wound Healing Tool

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