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Copy file name to clipboardExpand all lines: FragPipe-GUI/src/main/java/org/nesvilab/fragpipe/Version.java
+4-6Lines changed: 4 additions & 6 deletions
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@@ -67,21 +67,19 @@ public class Version {
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"MSFragger version 4.3 full changelog can be found in https://msfragger.nesvilab.org/CHANGELOG.html",
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"IonQuant version 1.11.11 full changelog can be found in https://ionquant.nesvilab.org/CHANGELOG.html",
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"diaTracer version 1.3.3 changelog can be found in https://diatracer.nesvilab.org/CHANGELOG.html",
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"Various bug fixes and performance improvements",
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"Miscellaneous:",
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"Require Java 11+",
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"Require MSFragger 4.3+",
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"Require IonQuant 1.11.1+",
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"Require IonQuant 1.11.11+",
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"Require diaTracer 1.3.3+",
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"Require Python 3.9, 3.10, or 3.11",
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"Require EasyPQP 0.1.52+",
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"Upgrade Crystal-C to 1.5.9",
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"Upgrade MSBooster to 1.3.17",
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"Upgrade Percolator to 3.7.1",
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"Upgrade Philosopher to 5.1.2",
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"Upgrade PTM-Shepherd to 3.0.2",
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"Upgrade TMT-Integrator to 6.1.1",
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"Upgrade FragPipe-PDV to 1.4.4"
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"Upgrade PTM-Shepherd to 3.0.2"
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));
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CHANGELOG.put("23.0", Arrays.asList(
@@ -710,7 +708,7 @@ public static void main(String[] args) {
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+ "- The (<a href='" + zipUrl + "' target='_blank'>" + zipFn + "</a>) is for Linux. You will need Java 11+ to run.\n"
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+ "- The (<a href='" + installerUrl + "' target='_blank'>" + installerFn + "</a>) is for Windows. You will need to install it. Java runtime is bundled and Python will be installed automatically.\n"
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+ "- The docker image is available at <a href='https://hub.docker.com/r/fcyucn/fragpipe' target='_blank'>https://hub.docker.com/r/fcyucn/fragpipe</a>\n"
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+ "- **NOTE:** Non-academic users (including those with an existing commercial license from the University of Michigan) must visit Fragmatics at [www.fragmatics.com](https://www.fragmatics.com) or email [[email protected]](mailto:[email protected]) to purchase or confirm their license and access the tools."
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+ "- **NOTE:** Non-academic users (including those with an existing commercial license from the University of Michigan) must visit Fragmatics at [www.fragmatics.com](https://www.fragmatics.com) or email [[email protected]](mailto:[email protected]) to purchase or confirm their license and access the tools.\n"
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+ "## Running\n"
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+ "- In Windows, install FragPipe using the installer. Then double-click the `FragPipe-" + version + ".exe` file.\n"
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+ "- In Linux, unzip the file. In `bin` subdirectory you will find a `shell script for Linux`\n";
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