Could not build wheels for pycocotools.Consultation on environmental installation issues

[yihp]

When I installed the environment, I got the following error:
(venv) yhp@wiat-PowerEdge-R740:/cvt2distilgpt2$ python -m pip install --upgrade -r requirements.txt --no-cache-dir -i https://mirrors.aliyun.com/pypi/simple/
Looking in indexes: https://mirrors.aliyun.com/pypi/simple/
Collecting dlhpcstarter==0.1.2 (from -r requirements.txt (line 1))
Downloading https://mirrors.aliyun.com/pypi/packages/f2/14/197e4e05dbef10e89a0551bbcf386af55b630315a41002cd0e07b4aafe40/dlhpcstarter-0.1.2-py3-none-any.whl (30 kB)
Collecting einops==0.3.2 (from -r requirements.txt (line 2))
Downloading https://mirrors.aliyun.com/pypi/packages/1e/00/919421f097de2a6ca2d9b4d9f3f596274e44c243a6ecca210cd0811032c0/einops-0.3.2-py3-none-any.whl (25 kB)
Collecting pycocoevalcap==1.2 (from -r requirements.txt (line 3))
Downloading https://mirrors.aliyun.com/pypi/packages/08/f9/466f289f1628296b5e368940f89e3cfcfb066d15ddc02ff536dc532b1c93/pycocoevalcap-1.2-py3-none-any.whl (104.3 MB)
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Collecting pycocotools==2.0.4 (from -r requirements.txt (line 4))
Downloading https://mirrors.aliyun.com/pypi/packages/75/5c/ac61ea715d7a89ecc31c090753bde28810238225ca8b71778dfe3e6a68bc/pycocotools-2.0.4.tar.gz (106 kB)
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Installing build dependencies ... done
Getting requirements to build wheel ... done
Preparing metadata (pyproject.toml) ... done
Collecting timm==0.4.12 (from -r requirements.txt (line 5))
Downloading https://mirrors.aliyun.com/pypi/packages/90/fc/606bc5cf46acac3aa9bd179b3954433c026aaf88ea98d6b19f5d14c336da/timm-0.4.12-py3-none-any.whl (376 kB)
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Collecting transformers==4.35.2 (from -r requirements.txt (line 6))
Downloading https://mirrors.aliyun.com/pypi/packages/12/dd/f17b11a93a9ca27728e12512d167eb1281c151c4c6881d3ab59eb58f4127/transformers-4.35.2-py3-none-any.whl (7.9 MB)
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Collecting yacs==0.1.8 (from -r requirements.txt (line 7))
Downloading https://mirrors.aliyun.com/pypi/packages/38/4f/fe9a4d472aa867878ce3bb7efb16654c5d63672b86dc0e6e953a67018433/yacs-0.1.8-py3-none-any.whl (14 kB)
Collecting Bottleneck>=1.3.7 (from dlhpcstarter==0.1.2->-r requirements.txt (line 1))
Downloading https://mirrors.aliyun.com/pypi/packages/43/4f/8ccd73a0c9baa686c05084b08ca949289ebba99ba77290c1e8279dff637c/Bottleneck-1.3.8-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (353 kB)
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Collecting GPUtil>=1.4 (from dlhpcstarter==0.1.2->-r requirements.txt (line 1))
Downloading https://mirrors.aliyun.com/pypi/packages/ed/0e/5c61eedde9f6c87713e89d794f01e378cfd9565847d4576fa627d758c554/GPUtil-1.4.0.tar.gz (5.5 kB)
Installing build dependencies ... done
Getting requirements to build wheel ... done
Installing backend dependencies ... done
Preparing metadata (pyproject.toml) ... done
Collecting hydra-core>=1.3.2 (from dlhpcstarter==0.1.2->-r requirements.txt (line 1))
Downloading https://mirrors.aliyun.com/pypi/packages/c6/50/e0edd38dcd63fb26a8547f13d28f7a008bc4a3fd4eb4ff030673f22ad41a/hydra_core-1.3.2-py3-none-any.whl (154 kB)
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Collecting lightning>=2.0.1 (from dlhpcstarter==0.1.2->-r requirements.txt (line 1))
Downloading https://mirrors.aliyun.com/pypi/packages/7c/5e/d21fa170f971cba1700cb5bd695ea71da9dd4d1e85c7b080b68652ffdc5b/lightning-2.2.4-py3-none-any.whl (2.0 MB)
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Collecting neptune-client==0.16.18 (from dlhpcstarter==0.1.2->-r requirements.txt (line 1))
Downloading https://mirrors.aliyun.com/pypi/packages/bb/62/88cf5e794a771973f9c20941d20de71d472f57e27a9182fe39aa6a329512/neptune_client-0.16.18-py3-none-any.whl (448 kB)
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Collecting numpy>=1.24.2 (from dlhpcstarter==0.1.2->-r requirements.txt (line 1))
Downloading https://mirrors.aliyun.com/pypi/packages/54/30/c2a907b9443cf42b90c17ad10c1e8fa801975f01cb9764f3f8eb8aea638b/numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (18.2 MB)
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Collecting protobuf==3.20.3 (from dlhpcstarter==0.1.2->-r requirements.txt (line 1))
Downloading https://mirrors.aliyun.com/pypi/packages/c7/df/ec3ecb8c940b36121c7b77c10acebf3d1c736498aa2f1fe3b6231ee44e76/protobuf-3.20.3-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.whl (1.0 MB)
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Collecting rich>=13.3.2 (from dlhpcstarter==0.1.2->-r requirements.txt (line 1))
Downloading https://mirrors.aliyun.com/pypi/packages/87/67/a37f6214d0e9fe57f6ae54b2956d550ca8365857f42a1ce0392bb21d9410/rich-13.7.1-py3-none-any.whl (240 kB)
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Collecting tensorboard>=2.12.0 (from dlhpcstarter==0.1.2->-r requirements.txt (line 1))
Downloading https://mirrors.aliyun.com/pypi/packages/3a/d0/b97889ffa769e2d1fdebb632084d5e8b53fc299d43a537acee7ec0c021a3/tensorboard-2.16.2-py3-none-any.whl (5.5 MB)
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Collecting torch>=1.11 (from dlhpcstarter==0.1.2->-r requirements.txt (line 1))
Downloading https://mirrors.aliyun.com/pypi/packages/da/af/abfe44a9ac7fd9705f145483e9e6c73a23d0533223082468eb2d978a494c/torch-2.3.0-cp39-cp39-manylinux1_x86_64.whl (779.1 MB)
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Collecting torchmetrics>=0.11.4 (from dlhpcstarter==0.1.2->-r requirements.txt (line 1))
Downloading https://mirrors.aliyun.com/pypi/packages/6d/e6/e51997d1818a4c1a1ad2b1c7ca5ff9dd95969596add58b2ed39479026964/torchmetrics-1.4.0.post0-py3-none-any.whl (868 kB)
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Collecting matplotlib>=2.1.0 (from pycocotools==2.0.4->-r requirements.txt (line 4))
Downloading https://mirrors.aliyun.com/pypi/packages/d3/6d/45837c5b3d0005a5a9b04729b218a16bf3aa195701c6b33b2cc39ae943b6/matplotlib-3.9.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (8.3 MB)
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Collecting torchvision (from timm==0.4.12->-r requirements.txt (line 5))
Downloading https://mirrors.aliyun.com/pypi/packages/54/20/309df7711dd17c399b7cd233e78bcee0f6fcdfbef5f2ec0930910c1884df/torchvision-0.18.0-cp39-cp39-manylinux1_x86_64.whl (7.0 MB)
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Collecting filelock (from transformers==4.35.2->-r requirements.txt (line 6))
Downloading https://mirrors.aliyun.com/pypi/packages/41/24/0b023b6537dfc9bae2c779353998e3e99ac7dfff4222fc6126650e93c3f3/filelock-3.14.0-py3-none-any.whl (12 kB)
Collecting huggingface-hub<1.0,>=0.16.4 (from transformers==4.35.2->-r requirements.txt (line 6))
Downloading https://mirrors.aliyun.com/pypi/packages/21/2b/516f82c5ba9beb184b24c11976be2ad5e80fb7fe6b2796c887087144445e/huggingface_hub-0.23.0-py3-none-any.whl (401 kB)
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Collecting packaging>=20.0 (from transformers==4.35.2->-r requirements.txt (line 6))
Downloading https://mirrors.aliyun.com/pypi/packages/49/df/1fceb2f8900f8639e278b056416d49134fb8d84c5942ffaa01ad34782422/packaging-24.0-py3-none-any.whl (53 kB)
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Collecting pyyaml>=5.1 (from transformers==4.35.2->-r requirements.txt (line 6))
Downloading https://mirrors.aliyun.com/pypi/packages/7d/39/472f2554a0f1e825bd7c5afc11c817cd7a2f3657460f7159f691fbb37c51/PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (738 kB)
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Collecting regex!=2019.12.17 (from transformers==4.35.2->-r requirements.txt (line 6))
Downloading https://mirrors.aliyun.com/pypi/packages/93/6c/3d801cd9c4d1e18d155cf55f4f1ec37ed2e0a5b52962d4622ee80032ed3d/regex-2024.5.15-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (774 kB)
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Collecting requests (from transformers==4.35.2->-r requirements.txt (line 6))
Downloading https://mirrors.aliyun.com/pypi/packages/70/8e/0e2d847013cb52cd35b38c009bb167a1a26b2ce6cd6965bf26b47bc0bf44/requests-2.31.0-py3-none-any.whl (62 kB)
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Collecting tokenizers<0.19,>=0.14 (from transformers==4.35.2->-r requirements.txt (line 6))
Downloading https://mirrors.aliyun.com/pypi/packages/a5/bc/ec39dae3b0ea00724c0fea287091d62b0ccaa45c7a947004714e882d193d/tokenizers-0.15.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (3.6 MB)
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Collecting safetensors>=0.3.1 (from transformers==4.35.2->-r requirements.txt (line 6))
Downloading https://mirrors.aliyun.com/pypi/packages/38/7f/3ba803bd6d726d65e480bee2aaeea79580d2e4836e4c6ebc27144c62ce51/safetensors-0.4.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (1.2 MB)
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Collecting tqdm>=4.27 (from transformers==4.35.2->-r requirements.txt (line 6))
Downloading https://mirrors.aliyun.com/pypi/packages/18/eb/fdb7eb9e48b7b02554e1664afd3bd3f117f6b6d6c5881438a0b055554f9b/tqdm-4.66.4-py3-none-any.whl (78 kB)
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Collecting GitPython>=2.0.8 (from neptune-client==0.16.18->dlhpcstarter==0.1.2->-r requirements.txt (line 1))
Downloading https://mirrors.aliyun.com/pypi/packages/e9/bd/cc3a402a6439c15c3d4294333e13042b915bbeab54edc457c723931fed3f/GitPython-3.1.43-py3-none-any.whl (207 kB)
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Collecting Pillow>=1.1.6 (from neptune-client==0.16.18->dlhpcstarter==0.1.2->-r requirements.txt (line 1))
Downloading https://mirrors.aliyun.com/pypi/packages/f5/6d/52e82352670e850f468de9e6bccced4202a09f58e7ea5ecdbf08283d85cb/pillow-10.3.0-cp39-cp39-manylinux_2_28_x86_64.whl (4.5 MB)
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Collecting PyJWT (from neptune-client==0.16.18->dlhpcstarter==0.1.2->-r requirements.txt (line 1))
Downloading https://mirrors.aliyun.com/pypi/packages/2b/4f/e04a8067c7c96c364cef7ef73906504e2f40d690811c021e1a1901473a19/PyJWT-2.8.0-py3-none-any.whl (22 kB)
Collecting boto3>=1.16.0 (from neptune-client==0.16.18->dlhpcstarter==0.1.2->-r requirements.txt (line 1))
Downloading https://mirrors.aliyun.com/pypi/packages/0e/a2/61fb8e3c7c571b0429d37c5106528aff43d1d036778ac6b3e10b073e89ab/boto3-1.34.106-py3-none-any.whl (139 kB)
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Collecting bravado<12.0.0,>=11.0.0 (from neptune-client==0.16.18->dlhpcstarter==0.1.2->-r requirements.txt (line 1))
Downloading https://mirrors.aliyun.com/pypi/packages/21/ed/03b0c36b5bcafbe2938ed222f9a164a6c0367ce99a9d2d502e462853571d/bravado-11.0.3-py2.py3-none-any.whl (38 kB)
Collecting click>=7.0 (from neptune-client==0.16.18->dlhpcstarter==0.1.2->-r requirements.txt (line 1))
Downloading https://mirrors.aliyun.com/pypi/packages/00/2e/d53fa4befbf2cfa713304affc7ca780ce4fc1fd8710527771b58311a3229/click-8.1.7-py3-none-any.whl (97 kB)
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Collecting future>=0.17.1 (from neptune-client==0.16.18->dlhpcstarter==0.1.2->-r requirements.txt (line 1))
Downloading https://mirrors.aliyun.com/pypi/packages/da/71/ae30dadffc90b9006d77af76b393cb9dfbfc9629f339fc1574a1c52e6806/future-1.0.0-py3-none-any.whl (491 kB)
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Collecting oauthlib>=2.1.0 (from neptune-client==0.16.18->dlhpcstarter==0.1.2->-r requirements.txt (line 1))
Downloading https://mirrors.aliyun.com/pypi/packages/7e/80/cab10959dc1faead58dc8384a781dfbf93cb4d33d50988f7a69f1b7c9bbe/oauthlib-3.2.2-py3-none-any.whl (151 kB)
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Collecting jsonschema-specifications>=2023.03.6 (from jsonschema->swagger-spec-validator>=2.7.4->neptune-client==0.16.18->dlhpcstarter==0.1.2->-r requirements.txt (line 1))
Downloading https://mirrors.aliyun.com/pypi/packages/ee/07/44bd408781594c4d0a027666ef27fab1e441b109dc3b76b4f836f8fd04fe/jsonschema_specifications-2023.12.1-py3-none-any.whl (18 kB)
Collecting referencing>=0.28.4 (from jsonschema->swagger-spec-validator>=2.7.4->neptune-client==0.16.18->dlhpcstarter==0.1.2->-r requirements.txt (line 1))
Downloading https://mirrors.aliyun.com/pypi/packages/b7/59/2056f61236782a2c86b33906c025d4f4a0b17be0161b63b70fd9e8775d36/referencing-0.35.1-py3-none-any.whl (26 kB)
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Collecting fqdn (from jsonschema[format-nongpl]>=2.5.1->bravado-core>=5.16.1->bravado<12.0.0,>=11.0.0->neptune-client==0.16.18->dlhpcstarter==0.1.2->-r requirements.txt (line 1))
Downloading https://mirrors.aliyun.com/pypi/packages/cf/58/8acf1b3e91c58313ce5cb67df61001fc9dcd21be4fadb76c1a2d540e09ed/fqdn-1.5.1-py3-none-any.whl (9.1 kB)
Collecting isoduration (from jsonschema[format-nongpl]>=2.5.1->bravado-core>=5.16.1->bravado<12.0.0,>=11.0.0->neptune-client==0.16.18->dlhpcstarter==0.1.2->-r requirements.txt (line 1))
Downloading https://mirrors.aliyun.com/pypi/packages/7b/55/e5326141505c5d5e34c5e0935d2908a74e4561eca44108fbfb9c13d2911a/isoduration-20.11.0-py3-none-any.whl (11 kB)
Collecting jsonpointer>1.13 (from jsonschema[format-nongpl]>=2.5.1->bravado-core>=5.16.1->bravado<12.0.0,>=11.0.0->neptune-client==0.16.18->dlhpcstarter==0.1.2->-r requirements.txt (line 1))
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Collecting rfc3339-validator (from jsonschema[format-nongpl]>=2.5.1->bravado-core>=5.16.1->bravado<12.0.0,>=11.0.0->neptune-client==0.16.18->dlhpcstarter==0.1.2->-r requirements.txt (line 1))
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Building wheels for collected packages: pycocotools, GPUtil, antlr4-python3-runtime, bravado-core
Building wheel for pycocotools (pyproject.toml) ... error
error: subprocess-exited-with-error

× Building wheel for pycocotools (pyproject.toml) did not run successfully.
│ exit code: 1
╰─> [25 lines of output]
running bdist_wheel
running build
running build_py
creating build
creating build/lib.linux-x86_64-cpython-39
creating build/lib.linux-x86_64-cpython-39/pycocotools
copying pycocotools/coco.py -> build/lib.linux-x86_64-cpython-39/pycocotools
copying pycocotools/mask.py -> build/lib.linux-x86_64-cpython-39/pycocotools
copying pycocotools/cocoeval.py -> build/lib.linux-x86_64-cpython-39/pycocotools
copying pycocotools/init.py -> build/lib.linux-x86_64-cpython-39/pycocotools
running build_ext
/tmp/pip-build-env-16s0pqoq/overlay/lib/python3.9/site-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-install-smmhyoxd/pycocotools_aaf0d4ad860442b391a4dfb041c7bc6e/pycocotools/_mask.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
Compiling pycocotools/_mask.pyx because it changed.
[1/1] Cythonizing pycocotools/_mask.pyx
building 'pycocotools._mask' extension
creating build/common
creating build/temp.linux-x86_64-cpython-39
creating build/temp.linux-x86_64-cpython-39/common
creating build/temp.linux-x86_64-cpython-39/pycocotools
gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -I/tmp/pip-build-env-16s0pqoq/overlay/lib/python3.9/site-packages/numpy/core/include -I./common -I/home/yhp/cvt2distilgpt2/venv/include -I/usr/local/include/python3.9 -c ../common/maskApi.c -o build/temp.linux-x86_64-cpython-39/../common/maskApi.o -Wno-cpp -Wno-unused-function -std=c99
gcc: error: ../common/maskApi.c: No such file or directory
gcc: fatal error: no input files
compilation terminated.
error: command '/usr/bin/gcc' failed with exit code 1
[end of output]

note: This error originates from a subprocess, and is likely not a problem with pip.
ERROR: Failed building wheel for pycocotools
Building wheel for GPUtil (pyproject.toml) ... done
Created wheel for GPUtil: filename=GPUtil-1.4.0-py3-none-any.whl size=7394 sha256=5a4fcbe30188dbbb7c5d145bd430e2c58ab7a2284b47b34e5b6822e595d400a6
Stored in directory: /tmp/pip-ephem-wheel-cache-b8nhwv1_/wheels/41/e4/67/37380d169541f59bf9c8a45c1ad949e1c36a4e305bde33bbc1
Building wheel for antlr4-python3-runtime (pyproject.toml) ... done
Created wheel for antlr4-python3-runtime: filename=antlr4_python3_runtime-4.9.3-py3-none-any.whl size=144554 sha256=ecc1c5d09649d2449e962f705d6bb12ee4f3f7ef691523be966d5897bb64a8a9
Stored in directory: /tmp/pip-ephem-wheel-cache-b8nhwv1_/wheels/17/a3/ee/5678d276fcb7792e61c1ed8df54efd68813dd6e28394d88b69
Building wheel for bravado-core (pyproject.toml) ... done
Created wheel for bravado-core: filename=bravado_core-6.1.1-py2.py3-none-any.whl size=67672 sha256=33d5ffa0cc34b627c0eb4141cc839b9ccff28fdeb8ea00fcdccd2b7a0c6e2d24
Stored in directory: /tmp/pip-ephem-wheel-cache-b8nhwv1_/wheels/7f/ab/1a/ae509401a4ae21927c3069acebaaf5dd591eb0ba4b4f047923
Successfully built GPUtil antlr4-python3-runtime bravado-core
Failed to build pycocotools
ERROR: Could not build wheels for pycocotools, which is required to install pyproject.toml-based projects
(venv) yhp@wiat-PowerEdge-R740:~/cvt2distilgpt2$

[anicolson]

Hi @yihp,

You are having issues with gcc and pycocotools. Please see the repo for pycocotools for a solution (install gcc).

Thanks,
A.

[briannlongzhao]

Try install pycocotools==2.0.7 instead of the version listed in requirements.txt