Upgrade to v3.8

Author: lvarin

.github/workflows/checks.yml

@@ -16,7 +16,7 @@ jobs:
       - name: Set up Python
         uses: actions/setup-python@v4
         with:
-          python-version: "3.7"
+          python-version: "3.8"
       - name: Install requirements
         run: |
           pip install .

Dockerfile

@@ -1,4 +1,4 @@
-FROM elixircloud/foca:20221110-py3.7
+FROM docker.io/elixircloud/foca:20231219-py3.11
 
 LABEL version="1.1"
 LABEL software="cwl-WES"

docker-compose.yaml

@@ -2,7 +2,7 @@ version: '3.6'
 services:
 
   wes:
-    image: elixircloud/cwl-wes:latest
+    image: docker.io/elixircloud/cwl-wes:latest
     build:
       context: .
       dockerfile: Dockerfile
@@ -16,7 +16,7 @@ services:
       - "8080:8080"
 
   wes-worker:
-    image: elixircloud/cwl-wes:latest
+    image: docker.io/elixircloud/cwl-wes:latest
     restart: unless-stopped
     depends_on:
       - wes

requirements.txt

@@ -1,5 +1,6 @@
 foca~=0.12.0
-cwl-tes @ git+https://github.com/ohsu-comp-bio/cwl-tes.git@7b44cb1825a302bb7eccb3f2d91dc233adc0e32f#egg=cwl-tes
+#cwl-tes @ git+https://github.com/ohsu-comp-bio/cwl-tes.git@7b44cb1825a302bb7eccb3f2d91dc233adc0e32f#egg=cwl-tes
+cwl-tes==0.3.0
 drs-cli~=0.2.3
 gunicorn~=19.9.0
 py-tes~=0.4.2