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Merged
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Nov 21, 2025
Merged

Update MAGs workflow to 0.4 #975

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495b34f
update workflow to 0.4
paulzierep Oct 7, 2025
6e9741c
text
paulzierep Oct 7, 2025
cf8a6f6
add release
paulzierep Oct 7, 2025
b77290d
update
paulzierep Oct 8, 2025
295f68f
change logic
paulzierep Nov 10, 2025
d10ae14
update workflow and tests
paulzierep Nov 11, 2025
69e9152
Merge branch 'main' into update-MAGs-workflow
paulzierep Nov 11, 2025
358617c
update changelog
paulzierep Nov 13, 2025
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Merge branch 'update-MAGs-workflow' of https://github.com/paulzierep/…
paulzierep Nov 13, 2025
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5 changes: 3 additions & 2 deletions workflows/microbiome/mags-building/CHANGELOG.md
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## [0.4] - 2025-10-07

### Logic Update
### Manual updates

* **metaSPAdes** now supports running in single-assembly mode when individual samples are submitted. Previously, it always performed co-assembly, which is the default tool setting.
* Grouping for grouped assemblies is now handled in the main workflow through a metadata sample sheet (`Metadata for grouped assembly/binning`). If no sample sheet is provided, individual assemblies are performed by default.
* **bakta**, **quast** (for the bins), **coverM** results are joined into one overview table each
* For **dRep** also the clustering results are generated.
* All tools have been updated to their latest versions.
* Workflow annotations.

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