From 9805ff4190cc379987cf628f82bc8c5a2911285d Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Mon, 25 Aug 2025 08:39:22 +0000 Subject: [PATCH 1/2] chore(deps): bump the actions group with 3 updates Bumps the actions group with 3 updates: [actions/checkout](https://github.com/actions/checkout), [astral-sh/setup-uv](https://github.com/astral-sh/setup-uv) and [actions/upload-pages-artifact](https://github.com/actions/upload-pages-artifact). Updates `actions/checkout` from 4 to 5 - [Release notes](https://github.com/actions/checkout/releases) - [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md) - [Commits](https://github.com/actions/checkout/compare/v4...v5) Updates `astral-sh/setup-uv` from 5 to 6 - [Release notes](https://github.com/astral-sh/setup-uv/releases) - [Commits](https://github.com/astral-sh/setup-uv/compare/v5...v6) Updates `actions/upload-pages-artifact` from 3 to 4 - [Release notes](https://github.com/actions/upload-pages-artifact/releases) - [Commits](https://github.com/actions/upload-pages-artifact/compare/v3...v4) --- updated-dependencies: - dependency-name: actions/checkout dependency-version: '5' dependency-type: direct:production update-type: version-update:semver-major dependency-group: actions - dependency-name: astral-sh/setup-uv dependency-version: '6' dependency-type: direct:production update-type: version-update:semver-major dependency-group: actions - dependency-name: actions/upload-pages-artifact dependency-version: '4' dependency-type: direct:production update-type: version-update:semver-major dependency-group: actions ... Signed-off-by: dependabot[bot] --- .github/workflows/ci.yml | 16 ++++++++-------- .github/workflows/docs.yml | 6 +++--- .github/workflows/docs_s3.yml | 4 ++-- 3 files changed, 13 insertions(+), 13 deletions(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index d58334f..b935357 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -13,8 +13,8 @@ jobs: Lint: runs-on: ubuntu-latest steps: - - uses: actions/checkout@v4 - - uses: astral-sh/setup-uv@v5 + - uses: actions/checkout@v5 + - uses: astral-sh/setup-uv@v6 with: version: "0.5.x" - run: | @@ -26,8 +26,8 @@ jobs: matrix: python-version: ["3.8", "3.9", "3.10", "3.11"] steps: - - uses: actions/checkout@v4 - - uses: astral-sh/setup-uv@v5 + - uses: actions/checkout@v5 + - uses: astral-sh/setup-uv@v6 with: version: "0.5.x" - run: uv run pytest @@ -38,7 +38,7 @@ jobs: name: JavaScript / Lint runs-on: ubuntu-latest steps: - - uses: actions/checkout@v4 + - uses: actions/checkout@v5 - uses: denoland/setup-deno@v2 with: deno-version: v2.x @@ -50,7 +50,7 @@ jobs: name: JavaScript / Typecheck runs-on: ubuntu-latest steps: - - uses: actions/checkout@v4 + - uses: actions/checkout@v5 - uses: denoland/setup-deno@v2 with: deno-version: v2.x @@ -65,8 +65,8 @@ jobs: id-token: write contents: read steps: - - uses: actions/checkout@v4 - - uses: astral-sh/setup-uv@v5 + - uses: actions/checkout@v5 + - uses: astral-sh/setup-uv@v6 with: version: "0.5.x" - run: uv build diff --git a/.github/workflows/docs.yml b/.github/workflows/docs.yml index d9267ab..081fd29 100644 --- a/.github/workflows/docs.yml +++ b/.github/workflows/docs.yml @@ -27,15 +27,15 @@ jobs: url: ${{ steps.deployment.outputs.page_url }} runs-on: ubuntu-latest steps: - - uses: actions/checkout@v4 - - uses: astral-sh/setup-uv@v5 + - uses: actions/checkout@v5 + - uses: astral-sh/setup-uv@v6 with: version: "0.5.x" - run: uv run docs/build.py - uses: actions/configure-pages@v5 - - uses: actions/upload-pages-artifact@v3 + - uses: actions/upload-pages-artifact@v4 with: path: "./docs/_build/html" - name: Deploy to GitHub Pages diff --git a/.github/workflows/docs_s3.yml b/.github/workflows/docs_s3.yml index 37556c0..bc28e2e 100644 --- a/.github/workflows/docs_s3.yml +++ b/.github/workflows/docs_s3.yml @@ -15,8 +15,8 @@ jobs: deploy_s3: runs-on: ubuntu-latest steps: - - uses: actions/checkout@v4 - - uses: astral-sh/setup-uv@v5 + - uses: actions/checkout@v5 + - uses: astral-sh/setup-uv@v6 with: version: "0.5.x" From c1510acce96ddfdf96fb94ac8df3ac2bbfac7b72 Mon Sep 17 00:00:00 2001 From: Nezar Abdennur Date: Fri, 5 Sep 2025 16:00:28 -0400 Subject: [PATCH 2/2] style: Formatting --- docs/higlass_theme/static/higlass.css | 8 ++------ 1 file changed, 2 insertions(+), 6 deletions(-) diff --git a/docs/higlass_theme/static/higlass.css b/docs/higlass_theme/static/higlass.css index 130a283..ff97c29 100644 --- a/docs/higlass_theme/static/higlass.css +++ b/docs/higlass_theme/static/higlass.css @@ -167,12 +167,8 @@ a:active { pre, tt, code { font-family: - "Roboto Mono", - "Consolas", - "Menlo", - "Deja Vu Sans Mono", - "Bitstream Vera Sans Mono", - monospace; + "Roboto Mono", "Consolas", "Menlo", "Deja Vu Sans Mono", + "Bitstream Vera Sans Mono", monospace; overflow: scroll; }