Skip to content

Use --delete-all-output instead of creating a clean rule #10

@andrewsanchez

Description

@andrewsanchez

To remove all files created by snakemake as output files to start from scratch, you can use

$ snakemake some_target --delete-all-output

https://snakemake.readthedocs.io/en/stable/project_info/faq.html#how-do-i-remove-all-files-created-by-snakemake-i-e-like-make-clean

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type
    No fields configured for issues without a type.

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions