From e915eff4b9663336ad0196c1cbf99d4f80220792 Mon Sep 17 00:00:00 2001
From: Matthew Feickert <matthew.feickert@cern.ch>
Date: Thu, 12 Oct 2023 00:55:32 -0500
Subject: [PATCH 1/6] feat: Add lockfile and locking script

* Move environment definition file to top level directory.
* Add conda-lock lock script that uses Docker and conda-lock to
  build a conda-lock lock file and then move it to binder/environment.yml
  to serve as the conda config file for Binder.
* Add built lock file.
---
 README.md              |    2 +-
 binder/environment.yml | 3838 +++++++++++++++++++++++++++++++++++++++-
 environment.yml        |   38 +
 lock.sh                |   21 +
 4 files changed, 3860 insertions(+), 39 deletions(-)
 create mode 100644 environment.yml
 create mode 100644 lock.sh

diff --git a/README.md b/README.md
index 5677961..2a0aece 100644
--- a/README.md
+++ b/README.md
@@ -12,7 +12,7 @@ Talk on pyhf new features at the PyHEP 2023 workshop
 ### conda/mamba/micromamba
 
 ```
-micromamba env create --file binder/environment.yml
+micromamba env create --file environment.yml
 ```
 
 and then activate the environment
diff --git a/binder/environment.yml b/binder/environment.yml
index c3e805d..9a543e1 100644
--- a/binder/environment.yml
+++ b/binder/environment.yml
@@ -1,39 +1,3801 @@
-name: pyhep-2023
-
-channels:
-  - conda-forge
-
-dependencies:
-  - python=3.11
-  # project core
-  - pyhf==0.7.4
-  - jax==0.4.14
-  - jaxlib==0.4.14
-  - pytorch==2.0.0
-  - array-api-compat==1.4
-  # cabinetry
-  - cabinetry==0.6.0
-  # bayesian-pyhf
-  - corner==2.2.2
-  # jupyter
-  # notebook v7.x seems to break SSL BinderHub for now
-  - notebook~=6.5
-  # use '>=' as different conda-forge releases across platforms
-  - jupyterlab>=4.0.6
-  - ipympl==0.9.3
-  - jupytext==1.15.2
-  - pip>=23.2.1
-  - pip:
-    # custom modifiers
-    - numexpr==2.8.7
-    # spey
-    - spey==0.1.1
-    - spey-pyhf==0.1.1
-    # bayesian-pyhf
-    - git+https://github.com/malin-horstmann/Bayesian_pyhf.git@b0dad6f526d8e9a36f367cefe2cba7f71f86653b
-    - pytensor==2.17.1
-
-# nonstandard, but used by conda-lock
-platforms:
+# This lock file was generated by conda-lock (https://github.com/conda/conda-lock). DO NOT EDIT!
+#
+# A "lock file" contains a concrete list of package versions (with checksums) to be installed. Unlike
+# e.g. `conda env create`, the resulting environment will not change as new package versions become
+# available, unless you explicitly update the lock file.
+#
+# Install this environment as "YOURENV" with:
+#     conda-lock install -n YOURENV --file conda-lock.yml
+# To update a single package to the latest version compatible with the version constraints in the source:
+#     conda-lock lock  --lockfile conda-lock.yml --update PACKAGE
+# To re-solve the entire environment, e.g. after changing a version constraint in the source file:
+#     conda-lock -f environment.yml --lockfile conda-lock.yml
+version: 1
+metadata:
+  content_hash:
+    linux-64: e0427719e83c4726319313f86c322496ebd71f9cfc7073a7f700a92d3fdac478
+  channels:
+  - url: conda-forge
+    used_env_vars: []
+  platforms:
   - linux-64
-  - osx-arm64
+  sources:
+  - environment.yml
+package:
+- name: _libgcc_mutex
+  version: '0.1'
+  manager: conda
+  platform: linux-64
+  dependencies: {}
+  url: https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-conda_forge.tar.bz2
+  hash:
+    md5: d7c89558ba9fa0495403155b64376d81
+    sha256: fe51de6107f9edc7aa4f786a70f4a883943bc9d39b3bb7307c04c41410990726
+  category: main
+  optional: false
+- name: ca-certificates
+  version: 2023.7.22
+  manager: conda
+  platform: linux-64
+  dependencies: {}
+  url: https://conda.anaconda.org/conda-forge/linux-64/ca-certificates-2023.7.22-hbcca054_0.conda
+  hash:
+    md5: a73ecd2988327ad4c8f2c331482917f2
+    sha256: 525b7b6b5135b952ec1808de84e5eca57c7c7ff144e29ef3e96ae4040ff432c1
+  category: main
+  optional: false
+- name: cuda-version
+  version: '11.8'
+  manager: conda
+  platform: linux-64
+  dependencies: {}
+  url: https://conda.anaconda.org/conda-forge/noarch/cuda-version-11.8-h70ddcb2_2.conda
+  hash:
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+    sha256: cb8a81465d5fa1b27e14981b7e1a9be4fc90945261a7459427e7bfb42129e26c
+  category: main
+  optional: false
+- name: ld_impl_linux-64
+  version: '2.40'
+  manager: conda
+  platform: linux-64
+  dependencies: {}
+  url: https://conda.anaconda.org/conda-forge/linux-64/ld_impl_linux-64-2.40-h41732ed_0.conda
+  hash:
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+    sha256: f6cc89d887555912d6c61b295d398cff9ec982a3417d38025c45d5dd9b9e79cd
+  category: main
+  optional: false
+- name: libstdcxx-ng
+  version: 13.2.0
+  manager: conda
+  platform: linux-64
+  dependencies: {}
+  url: https://conda.anaconda.org/conda-forge/linux-64/libstdcxx-ng-13.2.0-h7e041cc_2.conda
+  hash:
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+    sha256: ab22ecdc974cdbe148874ea876d9c564294d5eafa760f403ed4fd495307b4243
+  category: main
+  optional: false
+- name: python_abi
+  version: '3.11'
+  manager: conda
+  platform: linux-64
+  dependencies: {}
+  url: https://conda.anaconda.org/conda-forge/linux-64/python_abi-3.11-4_cp311.conda
+  hash:
+    md5: d786502c97404c94d7d58d258a445a65
+    sha256: 0be3ac1bf852d64f553220c7e6457e9c047dfb7412da9d22fbaa67e60858b3cf
+  category: main
+  optional: false
+- name: tzdata
+  version: 2023c
+  manager: conda
+  platform: linux-64
+  dependencies: {}
+  url: https://conda.anaconda.org/conda-forge/noarch/tzdata-2023c-h71feb2d_0.conda
+  hash:
+    md5: 939e3e74d8be4dac89ce83b20de2492a
+    sha256: 0449138224adfa125b220154408419ec37c06b0b49f63c5954724325903ecf55
+  category: main
+  optional: false
+- name: _openmp_mutex
+  version: '4.5'
+  manager: conda
+  platform: linux-64
+  dependencies:
+    _libgcc_mutex: '0.1'
+    llvm-openmp: '>=9.0.1'
+  url: https://conda.anaconda.org/conda-forge/linux-64/_openmp_mutex-4.5-2_kmp_llvm.tar.bz2
+  hash:
+    md5: 562b26ba2e19059551a811e72ab7f793
+    sha256: 84a66275da3a66e3f3e70e9d8f10496d807d01a9e4ec16cd2274cc5e28c478fc
+  category: main
+  optional: false
+- name: libgcc-ng
+  version: 13.2.0
+  manager: conda
+  platform: linux-64
+  dependencies:
+    _libgcc_mutex: '0.1'
+    _openmp_mutex: '>=4.5'
+  url: https://conda.anaconda.org/conda-forge/linux-64/libgcc-ng-13.2.0-h807b86a_2.conda
+  hash:
+    md5: c28003b0be0494f9a7664389146716ff
+    sha256: d361d3c87c376642b99c1fc25cddec4b9905d3d9b9203c1c545b8c8c1b04539a
+  category: main
+  optional: false
+- name: bzip2
+  version: 1.0.8
+  manager: conda
+  platform: linux-64
+  dependencies:
+    libgcc-ng: '>=9.3.0'
+  url: https://conda.anaconda.org/conda-forge/linux-64/bzip2-1.0.8-h7f98852_4.tar.bz2
+  hash:
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+    sha256: cb521319804640ff2ad6a9f118d972ed76d86bea44e5626c09a13d38f562e1fa
+  category: main
+  optional: false
+- name: c-ares
+  version: 1.20.1
+  manager: conda
+  platform: linux-64
+  dependencies:
+    libgcc-ng: '>=12'
+  url: https://conda.anaconda.org/conda-forge/linux-64/c-ares-1.20.1-hd590300_0.conda
+  hash:
+    md5: 6642e4faa4804be3a0e7edfefbd16595
+    sha256: afe0f91314a1de2969bb7ebb92bf6c9d3326fb8cdbdc00d8111bad8952a8dc0f
+  category: main
+  optional: false
+- name: cudatoolkit
+  version: 11.8.0
+  manager: conda
+  platform: linux-64
+  dependencies:
+    __glibc: '>=2.17,<3.0.a0'
+    libgcc-ng: '>=12'
+    libstdcxx-ng: '>=12'
+  url: https://conda.anaconda.org/conda-forge/linux-64/cudatoolkit-11.8.0-h4ba93d1_12.conda
+  hash:
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+  category: main
+  optional: false
+- name: gmp
+  version: 6.2.1
+  manager: conda
+  platform: linux-64
+  dependencies:
+    libgcc-ng: '>=7.5.0'
+    libstdcxx-ng: '>=7.5.0'
+  url: https://conda.anaconda.org/conda-forge/linux-64/gmp-6.2.1-h58526e2_0.tar.bz2
+  hash:
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+  category: main
+  optional: false
+- name: icu
+  version: '73.2'
+  manager: conda
+  platform: linux-64
+  dependencies:
+    libgcc-ng: '>=12'
+    libstdcxx-ng: '>=12'
+  url: https://conda.anaconda.org/conda-forge/linux-64/icu-73.2-h59595ed_0.conda
+  hash:
+    md5: cc47e1facc155f91abd89b11e48e72ff
+    sha256: e12fd90ef6601da2875ebc432452590bc82a893041473bc1c13ef29001a73ea8
+  category: main
+  optional: false
+- name: keyutils
+  version: 1.6.1
+  manager: conda
+  platform: linux-64
+  dependencies:
+    libgcc-ng: '>=10.3.0'
+  url: https://conda.anaconda.org/conda-forge/linux-64/keyutils-1.6.1-h166bdaf_0.tar.bz2
+  hash:
+    md5: 30186d27e2c9fa62b45fb1476b7200e3
+    sha256: 150c05a6e538610ca7c43beb3a40d65c90537497a4f6a5f4d15ec0451b6f5ebb
+  category: main
+  optional: false
+- name: lerc
+  version: 4.0.0
+  manager: conda
+  platform: linux-64
+  dependencies:
+    libgcc-ng: '>=12'
+    libstdcxx-ng: '>=12'
+  url: https://conda.anaconda.org/conda-forge/linux-64/lerc-4.0.0-h27087fc_0.tar.bz2
+  hash:
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+    sha256: cb55f36dcd898203927133280ae1dc643368af041a48bcf7c026acb7c47b0c12
+  category: main
+  optional: false
+- name: libabseil
+  version: '20230125.3'
+  manager: conda
+  platform: linux-64
+  dependencies:
+    libgcc-ng: '>=12'
+    libstdcxx-ng: '>=12'
+  url: https://conda.anaconda.org/conda-forge/linux-64/libabseil-20230125.3-cxx17_h59595ed_0.conda
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+  category: main
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+- name: libaec
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+  manager: conda
+  platform: linux-64
+  dependencies:
+    libgcc-ng: '>=12'
+    libstdcxx-ng: '>=12'
+  url: https://conda.anaconda.org/conda-forge/linux-64/libaec-1.1.2-h59595ed_1.conda
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+  version: 1.1.0
+  manager: conda
+  platform: linux-64
+  dependencies:
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+  url: https://conda.anaconda.org/conda-forge/linux-64/libbrotlicommon-1.1.0-hd590300_1.conda
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+  category: main
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+  manager: conda
+  platform: linux-64
+  dependencies:
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+  optional: false
+- name: libev
+  version: '4.33'
+  manager: conda
+  platform: linux-64
+  dependencies:
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+  url: https://conda.anaconda.org/conda-forge/linux-64/libev-4.33-h516909a_1.tar.bz2
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+- name: libexpat
+  version: 2.5.0
+  manager: conda
+  platform: linux-64
+  dependencies:
+    libgcc-ng: '>=12'
+  url: https://conda.anaconda.org/conda-forge/linux-64/libexpat-2.5.0-hcb278e6_1.conda
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+  category: main
+  optional: false
+- name: libffi
+  version: 3.4.2
+  manager: conda
+  platform: linux-64
+  dependencies:
+    libgcc-ng: '>=9.4.0'
+  url: https://conda.anaconda.org/conda-forge/linux-64/libffi-3.4.2-h7f98852_5.tar.bz2
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+  manager: conda
+  platform: linux-64
+  dependencies:
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+  url: https://conda.anaconda.org/conda-forge/linux-64/libgfortran5-13.2.0-ha4646dd_2.conda
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+  category: main
+  optional: false
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+  version: '1.17'
+  manager: conda
+  platform: linux-64
+  dependencies:
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+  url: https://conda.anaconda.org/conda-forge/linux-64/libiconv-1.17-h166bdaf_0.tar.bz2
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+  category: main
+  optional: false
+- name: libjpeg-turbo
+  version: 3.0.0
+  manager: conda
+  platform: linux-64
+  dependencies:
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+  url: https://conda.anaconda.org/conda-forge/linux-64/libjpeg-turbo-3.0.0-hd590300_1.conda
+  hash:
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+  category: main
+  optional: false
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+  manager: conda
+  platform: linux-64
+  dependencies:
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+  url: https://conda.anaconda.org/conda-forge/linux-64/libnsl-2.0.0-hd590300_1.conda
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+  optional: false
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+  manager: conda
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+  dependencies:
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+  url: https://conda.anaconda.org/conda-forge/linux-64/libsodium-1.0.18-h36c2ea0_1.tar.bz2
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+  category: main
+  optional: false
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+  version: 2.38.1
+  manager: conda
+  platform: linux-64
+  dependencies:
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+  url: https://conda.anaconda.org/conda-forge/linux-64/libuuid-2.38.1-h0b41bf4_0.conda
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+  optional: false
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+  version: 1.3.2
+  manager: conda
+  platform: linux-64
+  dependencies:
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+  url: https://conda.anaconda.org/conda-forge/linux-64/libwebp-base-1.3.2-hd590300_0.conda
+  hash:
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+  category: main
+  optional: false
+- name: libzlib
+  version: 1.2.13
+  manager: conda
+  platform: linux-64
+  dependencies:
+    libgcc-ng: '>=12'
+  url: https://conda.anaconda.org/conda-forge/linux-64/libzlib-1.2.13-hd590300_5.conda
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+    sha256: 370c7c5893b737596fd6ca0d9190c9715d89d888b8c88537ae1ef168c25e82e4
+  category: main
+  optional: false
+- name: nccl
+  version: 2.19.3.1
+  manager: conda
+  platform: linux-64
+  dependencies:
+    cuda-version: '>=11.8,<12.0a0'
+    libgcc-ng: '>=12'
+    libstdcxx-ng: '>=12'
+  url: https://conda.anaconda.org/conda-forge/linux-64/nccl-2.19.3.1-h6103f9b_0.conda
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+    sha256: 0464f985f4e1ab8ccbb4b3d169ece570a3ac6e6302d87e1da7b0ef35bc196249
+  category: main
+  optional: false
+- name: ncurses
+  version: '6.4'
+  manager: conda
+  platform: linux-64
+  dependencies:
+    libgcc-ng: '>=12'
+  url: https://conda.anaconda.org/conda-forge/linux-64/ncurses-6.4-hcb278e6_0.conda
+  hash:
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+    sha256: ccf61e61d58a8a7b2d66822d5568e2dc9387883dd9b2da61e1d787ece4c4979a
+  category: main
+  optional: false
+- name: openssl
+  version: 3.1.3
+  manager: conda
+  platform: linux-64
+  dependencies:
+    ca-certificates: ''
+    libgcc-ng: '>=12'
+  url: https://conda.anaconda.org/conda-forge/linux-64/openssl-3.1.3-hd590300_0.conda
+  hash:
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+    sha256: f4e35f506c7e8ab7dfdc47255b0d5aa8ce0c99028ae0affafd274333042c4f70
+  category: main
+  optional: false
+- name: pthread-stubs
+  version: '0.4'
+  manager: conda
+  platform: linux-64
+  dependencies:
+    libgcc-ng: '>=7.5.0'
+  url: https://conda.anaconda.org/conda-forge/linux-64/pthread-stubs-0.4-h36c2ea0_1001.tar.bz2
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+    sha256: 1d841546fd239d7edefbf00edd3bad4680b12c3eb2549026d6aa70a301f23295
+  category: main
+  optional: false
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+  manager: conda
+  platform: linux-64
+  dependencies:
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+    send2trash: '>=1.8.0'
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+  hash:
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+  category: main
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+- name: notebook
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+    ipykernel: ''
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+  manager: pip
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+- name: semantic-version
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+  manager: pip
+  platform: linux-64
+  dependencies: {}
+  url: https://files.pythonhosted.org/packages/6a/23/8146aad7d88f4fcb3a6218f41a60f6c2d4e3a72de72da1825dc7c8f7877c/semantic_version-2.10.0-py2.py3-none-any.whl
+  hash:
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+  category: main
+  optional: false
+- name: toolz
+  version: 0.12.0
+  manager: pip
+  platform: linux-64
+  dependencies: {}
+  url: https://files.pythonhosted.org/packages/7f/5c/922a3508f5bda2892be3df86c74f9cf1e01217c2b1f8a0ac4841d903e3e9/toolz-0.12.0-py3-none-any.whl
+  hash:
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+  category: main
+  optional: false
+- name: autograd
+  version: '1.5'
+  manager: pip
+  platform: linux-64
+  dependencies:
+    numpy: '>=1.12'
+    future: '>=0.15.2'
+  url: https://files.pythonhosted.org/packages/69/f1/6243ceee10af0b0252bd7a94a9a715793c9097eed6d83f877b244e362372/autograd-1.5-py3-none-any.whl
+  hash:
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+  category: main
+  optional: false
+- name: logical-unification
+  version: 0.4.6
+  manager: pip
+  platform: linux-64
+  dependencies:
+    toolz: '*'
+    multipledispatch: '*'
+  url: https://files.pythonhosted.org/packages/c0/73/8dac224c46949e61bc52558384138a2b79fa0b7be10367074862fe9994dd/logical-unification-0.4.6.tar.gz
+  hash:
+    sha256: 908435123f8a106fa4dcf9bf1b75c7beb309fa2bbecf277868af8f1c212650a0
+  category: main
+  optional: false
+- name: numexpr
+  version: 2.8.7
+  manager: pip
+  platform: linux-64
+  dependencies:
+    numpy: '>=1.13.3'
+  url: https://files.pythonhosted.org/packages/6a/3e/fa33d67bc4f5ee05f5bc2ce65fd1a796211f0b759cec3f60ded2763013b9/numexpr-2.8.7-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
+  hash:
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+  category: main
+  optional: false
+- name: scipy
+  version: 1.10.0
+  manager: pip
+  platform: linux-64
+  dependencies:
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+  url: https://files.pythonhosted.org/packages/da/b8/03dae1cd4fa687d84cd60513aef17efecf7c277bc771bb96a1d8780dd734/scipy-1.10.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
+  hash:
+    sha256: 2ad449db4e0820e4b42baccefc98ec772ad7818dcbc9e28b85aa05a536b0f1a2
+  category: main
+  optional: false
+- name: setuptools-scm
+  version: 8.0.4
+  manager: pip
+  platform: linux-64
+  dependencies:
+    packaging: '>=20'
+    typing-extensions: '*'
+  url: https://files.pythonhosted.org/packages/0e/a3/b9a8b0adfe672bf0df5901707aa929d30a97ee390ba651910186776746d2/setuptools_scm-8.0.4-py3-none-any.whl
+  hash:
+    sha256: b47844cd2a84b83b3187a5782c71128c28b4c94cad8bfb871da2784a5cb54c4f
+  category: main
+  optional: false
+- name: cons
+  version: 0.4.6
+  manager: pip
+  platform: linux-64
+  dependencies:
+    logical-unification: '>=0.4.0'
+  url: https://files.pythonhosted.org/packages/1c/90/23f2b21206c4dc62edc3ee9c051fe06ef92b9213141498505a3e19b36c09/cons-0.4.6.tar.gz
+  hash:
+    sha256: 669fe9d5ee916d5e42b9cac6acc911df803d04f2e945c1604982a04d27a29b47
+  category: main
+  optional: false
+- name: pyhf
+  version: 0.7.3
+  manager: pip
+  platform: linux-64
+  dependencies:
+    click: '>=8.0.0'
+    jsonpatch: '>=1.15'
+    jsonschema: '>=4.15.0'
+    numpy: '*'
+    pyyaml: '>=5.1'
+    scipy: '>=1.2.0'
+    tqdm: '>=4.56.0'
+  url: https://files.pythonhosted.org/packages/66/dc/fa92d8c8ada923e0c23ad3c4535f70fb28049009edc065159dff1fe8fcce/pyhf-0.7.3-py3-none-any.whl
+  hash:
+    sha256: 11647c79a515be65c061780fb9e06a885195fba2774c5d4ccce6da1a30781064
+  category: main
+  optional: false
+- name: spey
+  version: 0.1.1
+  manager: pip
+  platform: linux-64
+  dependencies:
+    numpy: '>=1.21.6'
+    scipy: 1.10.0
+    autograd: '1.5'
+    semantic-version: '>=2.10,<3.0'
+    tqdm: '>=4.64.0'
+  url: https://files.pythonhosted.org/packages/70/fb/e4e916ef9edc47e76964fc2437964e2c410fc3089189483555bd772ff16d/spey-0.1.1-py3-none-any.whl
+  hash:
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+  category: main
+  optional: false
+- name: etuples
+  version: 0.3.9
+  manager: pip
+  platform: linux-64
+  dependencies:
+    cons: '*'
+    multipledispatch: '*'
+  url: https://files.pythonhosted.org/packages/22/60/134940a09d03786ad7267e53458a749e2f4bfaf1efd672363e87a4a13561/etuples-0.3.9.tar.gz
+  hash:
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+  category: main
+  optional: false
+- name: spey-pyhf
+  version: 0.1.1
+  manager: pip
+  platform: linux-64
+  dependencies:
+    pyhf: 0.7.3
+    spey: '>=0.1.1'
+  url: https://files.pythonhosted.org/packages/67/21/97fcef5cae5322cd789942f8b8c3035e895e2d9756c3d041c315dcbbb109/spey_pyhf-0.1.1-py3-none-any.whl
+  hash:
+    sha256: 05c344cfc9fe2302687b9558992dbd18d7569d4bd33aaa62b7318b7416681d03
+  category: main
+  optional: false
+- name: minikanren
+  version: 1.0.3
+  manager: pip
+  platform: linux-64
+  dependencies:
+    toolz: '*'
+    cons: '>=0.4.0'
+    multipledispatch: '*'
+    etuples: '>=0.3.1'
+    logical-unification: '>=0.4.1'
+  url: https://files.pythonhosted.org/packages/c8/21/1be8af0ecaf5a61abebabc8dabf63a08d72334ced5bb9f9d027fd7abbf42/miniKanren-1.0.3.tar.gz
+  hash:
+    sha256: 1ec8bdb01144ad5e8752c7c297fb8a122db920f859276d25a72d164e998d7f6e
+  category: main
+  optional: false
+- name: pytensor
+  version: 2.17.1
+  manager: pip
+  platform: linux-64
+  dependencies:
+    scipy: '>=0.14'
+    numpy: '>=1.17.0,<1.26'
+    filelock: '*'
+    etuples: '*'
+    logical-unification: '*'
+    minikanren: '*'
+    cons: '*'
+    typing-extensions: '*'
+  url: https://files.pythonhosted.org/packages/ea/50/494392fdee32ecfab48722120c5dfdd8f8a813cfe894f8dbb3e94b382e1c/pytensor-2.17.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
+  hash:
+    sha256: 8d19ad4dbadc2c3d57d7984006264ef04b4ce3bc1753a49d83422cc5d44a913e
+  category: main
+  optional: false
+- name: pymc
+  version: 5.9.0
+  manager: pip
+  platform: linux-64
+  dependencies:
+    arviz: '>=0.13.0'
+    cachetools: '>=4.2.1'
+    cloudpickle: '*'
+    fastprogress: '>=0.2.0'
+    numpy: '>=1.15.0'
+    pandas: '>=0.24.0'
+    pytensor: '>=2.17.0,<2.18'
+    scipy: '>=1.4.1'
+    typing-extensions: '>=3.7.4'
+  url: https://files.pythonhosted.org/packages/45/89/341da7baee2d8e6e2654e50ebc4d1dca49c762a8a132b6cd6cb1eae1fa80/pymc-5.9.0-py3-none-any.whl
+  hash:
+    sha256: 016d0827976829585e1c4cb3472c4d6822ac198c9a4106f1aac7b7d1ce31d7a6
+  category: main
+  optional: false
+- name: bayesian-pyhf
+  version: 0.1.dev317
+  manager: pip
+  platform: linux-64
+  dependencies:
+    jax: '>=0.4.2'
+    jaxlib: '>=0.4.11'
+    matplotlib: '>=3.6.3'
+    numpy: '*'
+    pyhf: '>=0.7.0'
+    pymc: '>=5.0.2'
+    pytensor: '*'
+  url: git+https://github.com/malin-horstmann/Bayesian_pyhf.git@b0dad6f526d8e9a36f367cefe2cba7f71f86653b
+  hash:
+    sha256: b0dad6f526d8e9a36f367cefe2cba7f71f86653b
+  category: main
+  source:
+    type: url
+    url: git+https://github.com/malin-horstmann/Bayesian_pyhf.git@b0dad6f526d8e9a36f367cefe2cba7f71f86653b
+  optional: false
diff --git a/environment.yml b/environment.yml
new file mode 100644
index 0000000..19e6550
--- /dev/null
+++ b/environment.yml
@@ -0,0 +1,38 @@
+name: pyhep-2023
+
+channels:
+  - conda-forge
+
+dependencies:
+  - python=3.11
+  # project core
+  - pyhf==0.7.4
+  - jax==0.4.14
+  - jaxlib==0.4.14
+  - pytorch==2.0.0
+  - array-api-compat==1.4
+  # cabinetry
+  - cabinetry==0.6.0
+  # bayesian-pyhf
+  - corner==2.2.2
+  # jupyter
+  # notebook v7.x seems to break SSL BinderHub for now
+  - notebook~=6.5
+  # use '>=' as different conda-forge releases across platforms
+  - jupyterlab>=4.0.6
+  - ipympl==0.9.3
+  - jupytext==1.15.2
+  - pip>=23.2.1
+  - pip:
+    # custom modifiers
+    - numexpr==2.8.7
+    # spey
+    - spey==0.1.1
+    - spey-pyhf==0.1.1
+    # bayesian-pyhf
+    - git+https://github.com/malin-horstmann/Bayesian_pyhf.git@b0dad6f526d8e9a36f367cefe2cba7f71f86653b
+    - pytensor==2.17.1
+
+# nonstandard, but used by conda-lock
+platforms:
+  - linux-64
diff --git a/lock.sh b/lock.sh
new file mode 100644
index 0000000..f2bd399
--- /dev/null
+++ b/lock.sh
@@ -0,0 +1,21 @@
+#!/bin/bash
+
+IMAGE="mambaorg/micromamba:1.4.9-bullseye-slim"
+
+docker pull "${IMAGE}"
+
+docker run \
+    --rm \
+    --volume "${PWD}":/work \
+    --workdir /work \
+    "${IMAGE}" \
+    /bin/bash -c "\
+        micromamba install \
+            --yes \
+            --channel conda-forge \
+            conda-lock \
+            git && \
+        conda-lock lock \
+            --micromamba \
+            --file environment.yml && \
+        mv conda-lock.yml binder/environment.yml"

From 12da9cc92358fb1e6814f91c4acc07ac8e0ba102 Mon Sep 17 00:00:00 2001
From: Matthew Feickert <matthew.feickert@cern.ch>
Date: Thu, 12 Oct 2023 14:50:31 -0500
Subject: [PATCH 2/6] Update lock to just use normal lockfile name

---
 binder/{environment.yml => conda-lock.yml} | 71 +++++++++++++---------
 lock.sh                                    |  2 +-
 2 files changed, 43 insertions(+), 30 deletions(-)
 rename binder/{environment.yml => conda-lock.yml} (98%)

diff --git a/binder/environment.yml b/binder/conda-lock.yml
similarity index 98%
rename from binder/environment.yml
rename to binder/conda-lock.yml
index 9a543e1..666a8ad 100644
--- a/binder/environment.yml
+++ b/binder/conda-lock.yml
@@ -215,16 +215,16 @@ package:
   category: main
   optional: false
 - name: libabseil
-  version: '20230125.3'
+  version: '20230802.1'
   manager: conda
   platform: linux-64
   dependencies:
     libgcc-ng: '>=12'
     libstdcxx-ng: '>=12'
-  url: https://conda.anaconda.org/conda-forge/linux-64/libabseil-20230125.3-cxx17_h59595ed_0.conda
+  url: https://conda.anaconda.org/conda-forge/linux-64/libabseil-20230802.1-cxx17_h59595ed_0.conda
   hash:
-    md5: d1db1b8be7c3a8983dcbbbfe4f0765de
-    sha256: 3c6fab31ed4dc8428605588454596b307b1bd59d33b0c7073c407ab51408b011
+    md5: 2785ddf4cb0e7e743477991d64353947
+    sha256: 8729021a93e67bb93b4e73ef0a132499db516accfea11561b667635bcd0507e7
   category: main
   optional: false
 - name: libaec
@@ -372,6 +372,18 @@ package:
     sha256: 787eb542f055a2b3de553614b25f09eefb0a0931b0c87dbcce6efdfd92f04f18
   category: main
   optional: false
+- name: libuv
+  version: 1.46.0
+  manager: conda
+  platform: linux-64
+  dependencies:
+    libgcc-ng: '>=12'
+  url: https://conda.anaconda.org/conda-forge/linux-64/libuv-1.46.0-hd590300_0.conda
+  hash:
+    md5: d23c76f7e6dcd6243d1b6ef5e62d17d2
+    sha256: 4bc4c946e9a532c066442714eeeeb1ffbd03cd89789c4047293f5e782b5fedd7
+  category: main
+  optional: false
 - name: libwebp-base
   version: 1.3.2
   manager: conda
@@ -620,17 +632,18 @@ package:
   category: main
   optional: false
 - name: libprotobuf
-  version: 3.21.12
+  version: 4.24.3
   manager: conda
   platform: linux-64
   dependencies:
+    libabseil: '>=20230802.1,<20230803.0a0'
     libgcc-ng: '>=12'
     libstdcxx-ng: '>=12'
     libzlib: '>=1.2.13,<1.3.0a0'
-  url: https://conda.anaconda.org/conda-forge/linux-64/libprotobuf-3.21.12-hfc55251_2.conda
+  url: https://conda.anaconda.org/conda-forge/linux-64/libprotobuf-4.24.3-hf27288f_0.conda
   hash:
-    md5: e3a7d4ba09b8dc939b98fef55f539220
-    sha256: 2df8888c51c23dedc831ba4378bad259e95c3a20a6408f54926a6a6f629f6153
+    md5: f2877435606cb6069201c6dceab9ac45
+    sha256: 0101e3f22e70042e5e8661f76e0bea8c3d3366ea474078107d726e66896fa5c7
   category: main
   optional: false
 - name: libsqlite
@@ -816,23 +829,22 @@ package:
   category: main
   optional: false
 - name: libgrpc
-  version: 1.54.3
+  version: 1.58.1
   manager: conda
   platform: linux-64
   dependencies:
     c-ares: '>=1.19.1,<2.0a0'
-    libabseil: '>=20230125.3,<20230126.0a0'
+    libabseil: '>=20230802.1,<20230803.0a0'
     libgcc-ng: '>=12'
-    libprotobuf: '>=3.21.12,<3.22.0a0'
+    libprotobuf: '>=4.24.3,<4.24.4.0a0'
     libstdcxx-ng: '>=12'
     libzlib: '>=1.2.13,<1.3.0a0'
-    openssl: '>=3.1.1,<4.0a0'
+    openssl: '>=3.1.3,<4.0a0'
     re2: '>=2023.3.2,<2023.3.3.0a0'
-    zlib: ''
-  url: https://conda.anaconda.org/conda-forge/linux-64/libgrpc-1.54.3-hb20ce57_0.conda
+  url: https://conda.anaconda.org/conda-forge/linux-64/libgrpc-1.58.1-h30d5116_0.conda
   hash:
-    md5: 7af7c59ab24db007dfd82e0a3a343f66
-    sha256: f5fea0c2eececb010529ac5863fbede05a2413ea8dc1a1c419db861f68ed66d7
+    md5: 56e42a3f59383f1cf4e454cfc57dd79e
+    sha256: 499be73f5214f287d1a66797ce74befe57f4d8f498ad8ac102b7837e1905d761
   category: main
   optional: false
 - name: libhwloc
@@ -2887,22 +2899,22 @@ package:
     __glibc: '>=2.17'
     cudatoolkit: '>=11.2,<12'
     cudnn: '>=8.8.0.121,<9.0a0'
-    libabseil: '>=20230125.3,<20230126.0a0'
+    libabseil: '>=20230802.1,<20230803.0a0'
     libgcc-ng: '>=12'
-    libgrpc: '>=1.54.2,<1.55.0a0'
+    libgrpc: '>=1.58.1,<1.59.0a0'
     libstdcxx-ng: '>=12'
     libzlib: '>=1.2.13,<1.3.0a0'
     ml_dtypes: '>=0.2.0'
-    nccl: '>=2.18.3.1,<3.0a0'
+    nccl: '>=2.19.3.1,<3.0a0'
     numpy: '>=1.23.5,<2.0a0'
-    openssl: '>=3.1.1,<4.0a0'
+    openssl: '>=3.1.3,<4.0a0'
     python: '>=3.11,<3.12.0a0'
     python_abi: 3.11.*
     scipy: '>=1.7'
-  url: https://conda.anaconda.org/conda-forge/linux-64/jaxlib-0.4.14-cuda112py311hf2474b9_201.conda
+  url: https://conda.anaconda.org/conda-forge/linux-64/jaxlib-0.4.14-cuda112py311h2c9cedd_201.conda
   hash:
-    md5: 4330ea24faa59bd41aed3a48b066e396
-    sha256: 02632d1b70b4e81456aafee1c64d64111bc414be08655057cb16fad280b28041
+    md5: b5878899b145b817dfd3fd5040551a88
+    sha256: d7540d132284b38cd2061d1980dc221dde155f3cccab635df80e2c09dc2b8d2c
   category: main
   optional: false
 - name: jsonschema-with-format-nongpl
@@ -3170,18 +3182,19 @@ package:
     __glibc: '>=2.17,<3.0.a0'
     _openmp_mutex: '>=4.5'
     cudatoolkit: '>=11.2,<12'
-    cudnn: '>=8.4.1.50,<9.0a0'
+    cudnn: '>=8.8.0.121,<9.0a0'
     filelock: ''
     jinja2: ''
     libcblas: '>=3.9.0,<4.0a0'
     libgcc-ng: '>=12'
     libmagma: '>=2.7.1,<2.7.2.0a0'
     libmagma_sparse: '>=2.7.1,<2.7.2.0a0'
-    libprotobuf: '>=3.21.12,<3.22.0a0'
+    libprotobuf: '>=4.24.3,<4.24.4.0a0'
     libstdcxx-ng: '>=12'
+    libuv: '>=1.46.0,<2.0a0'
     magma: '>=2.7.1,<2.7.2.0a0'
     mkl: '>=2022.2.1,<2023.0a0'
-    nccl: '>=2.14.3.1,<3.0a0'
+    nccl: '>=2.19.3.1,<3.0a0'
     networkx: ''
     numpy: '>=1.23.5,<2.0a0'
     python: '>=3.11,<3.12.0a0'
@@ -3189,10 +3202,10 @@ package:
     sleef: '>=3.5.1,<4.0a0'
     sympy: ''
     typing_extensions: ''
-  url: https://conda.anaconda.org/conda-forge/linux-64/pytorch-2.0.0-cuda112py311h13fee9e_200.conda
+  url: https://conda.anaconda.org/conda-forge/linux-64/pytorch-2.0.0-cuda112py311hf4e4fe6_303.conda
   hash:
-    md5: 9b2121541f34d97e226cc9dfd88dd7d4
-    sha256: 26a1fb7975158c7b91dc624e054aacd0fd46b7c27de008e27081a2cd38e63d10
+    md5: 10e879596392d6e3a80b56b06734bb1b
+    sha256: dc83357d9089e891c242d5670dca367be92585662e3fedd1864ee57fc2d9d60a
   category: main
   optional: false
 - name: xarray-einstats
diff --git a/lock.sh b/lock.sh
index f2bd399..559f606 100644
--- a/lock.sh
+++ b/lock.sh
@@ -18,4 +18,4 @@ docker run \
         conda-lock lock \
             --micromamba \
             --file environment.yml && \
-        mv conda-lock.yml binder/environment.yml"
+        mv conda-lock.yml binder/"

From 0d18239ea52e834f21b670b83e58f5d24f9a891f Mon Sep 17 00:00:00 2001
From: Matthew Feickert <matthew.feickert@cern.ch>
Date: Thu, 12 Oct 2023 14:53:29 -0500
Subject: [PATCH 3/6] Install into local environment

---
 binder/postBuild | 3 +++
 1 file changed, 3 insertions(+)

diff --git a/binder/postBuild b/binder/postBuild
index 5f334e1..2d550ab 100644
--- a/binder/postBuild
+++ b/binder/postBuild
@@ -1,3 +1,6 @@
+# Install environment from lock file
+conda env update --file binder/conda-lock.yml --prune
+
 # custom modifiers until pyhf v0.8.0rc1 is released
 python -m pip install --upgrade pip wheel
 python -m pip install --upgrade git+https://github.com/scikit-hep/pyhf.git@feat/addCustomModifierPython

From 321a8db6e84311d09478c05c23380b0cd9fb9c8d Mon Sep 17 00:00:00 2001
From: Matthew Feickert <matthew.feickert@cern.ch>
Date: Thu, 12 Oct 2023 16:09:03 -0500
Subject: [PATCH 4/6] try conda install

---
 binder/postBuild | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/binder/postBuild b/binder/postBuild
index 2d550ab..85976fe 100644
--- a/binder/postBuild
+++ b/binder/postBuild
@@ -1,5 +1,5 @@
 # Install environment from lock file
-conda env update --file binder/conda-lock.yml --prune
+conda install --file binder/conda-lock.yml
 
 # custom modifiers until pyhf v0.8.0rc1 is released
 python -m pip install --upgrade pip wheel

From 0cc9674ffca8c1c174dfbdceb483d5bc72a799a4 Mon Sep 17 00:00:00 2001
From: Matthew Feickert <matthew.feickert@cern.ch>
Date: Thu, 12 Oct 2023 16:12:08 -0500
Subject: [PATCH 5/6] Try micromamba

---
 binder/postBuild | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/binder/postBuild b/binder/postBuild
index 85976fe..bc9efdd 100644
--- a/binder/postBuild
+++ b/binder/postBuild
@@ -1,5 +1,5 @@
 # Install environment from lock file
-conda install --file binder/conda-lock.yml
+micromamba install --file binder/conda-lock.yml
 
 # custom modifiers until pyhf v0.8.0rc1 is released
 python -m pip install --upgrade pip wheel

From a84012f483cf5ed2e5a0b7a8cb98b5c7de727617 Mon Sep 17 00:00:00 2001
From: Matthew Feickert <matthew.feickert@cern.ch>
Date: Thu, 12 Oct 2023 16:31:09 -0500
Subject: [PATCH 6/6] Revert "Try micromamba"

This reverts commit 0cc9674ffca8c1c174dfbdceb483d5bc72a799a4.
---
 binder/postBuild | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/binder/postBuild b/binder/postBuild
index bc9efdd..85976fe 100644
--- a/binder/postBuild
+++ b/binder/postBuild
@@ -1,5 +1,5 @@
 # Install environment from lock file
-micromamba install --file binder/conda-lock.yml
+conda install --file binder/conda-lock.yml
 
 # custom modifiers until pyhf v0.8.0rc1 is released
 python -m pip install --upgrade pip wheel