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adding imswithc install docs
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docs/01_Toolboxes/06_DiscoveryFluorescence/01_Fluoresence_smart_microscope renamed to docs/01_Toolboxes/06_DiscoveryFluorescence/01_Fluoresence_smart_microscope.md

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@@ -25,7 +25,7 @@ Image einfügen, vollständiger Aufbau / Fluoresence Bild
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Image einfügen Foto real nur Bauteile
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### Diagram
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![](docs\01_Toolboxes\06_DiscoveryFluorescence\01_Fluoresence_smart_microscope)
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![](./IMAGES/FluoMicroscrope_Diagram.png)
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### Theory of Operation
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3. **Control the System**:
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Use the ImSwitch GUI to move the motorized stage, control the LED array, and capture images. The interface allows you to automate tasks such as focus stacking and digital phase-contrast imaging.
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## Install Raspberry Pi + ImSwitch
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1. Download Raspberry PI Imager
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2. Flash Raspberry Pi OS 64Bit Bookworm Lite on an SD card with appropriate size (e.g. 64GB ) -> add the necessary settings (i.e. SSH, wifi password, uc2/youseetoo password/login ) )> Flash
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3. Boot Raspberry Pi and wait until it's full there; ~5 minutes => It should be connected to you r wifi; you're computer should be in the same network
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4. You should be able to log into that using ssh
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5. Install imswitch; Go to https://github.com/openUC2/ImSwitchDockerInstall?tab=readme-ov-file#imswitch--docker-on-raspi and then follow the procedures:
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```bash
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cd ~/Downloads
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git clone https://github.com/openUC2/ImSwitchDockerInstall
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cd ImSwitchDockerInstall
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chmod +x install_all.sh
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./install_all.sh
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```
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This will:
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- install docker
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- install all necessary camera drivers
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- install imswitch via Python
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- create necessray startup files on the desktop
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- You can launch it by doing; `bash ~/Desktop/launch_docker_container.sh`
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6. Go to your browser and enter the `https://IP-OF-YOUR-RASPI:8001/imswitch/index.html`
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7. Have a look for additional information here: https://openuc2.github.io/docs/ImSwitch/ImSwitchOnRaspi/
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### Video Tutorial
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For a visual guide on how to set up ImSwitch and control the UC2 system, watch the following video:
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docs/01_Toolboxes/06_DiscoveryFluorescence/README.md

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