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# Project Structure
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## Data files: in ./data/ folder
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## Data files: in ./data/ folder in GitHub repo used for example
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*`node_index.txt`: names of each protein/phenotypic node.
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*`expr_index.txt`: information each perturbation condition. This is one of the original data files we downloaded from [paper](https://elifesciences.org/articles/04640) and is only used here as a reference for the condition names. In other words the 2nd and 3rd columns are not being used in CellBox. See `loo_label.csv` for the actual indexing of perturbation targets.
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*`expr.csv`: Protein expression data from RPPA for the protein nodes and phenotypic node values. Each row is a condition while each column is a node.
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