pertpy/CITATION.cff at main · scverse/pertpy · GitHub

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cff-version: 1.2.0
message: If you use pertpy in your research, please cite the article below.
title: pertpy
abstract: >-
  Pertpy is a scverse ecosystem framework for analyzing large-scale single-cell perturbation experiments.
  It provides tools for harmonizing perturbation datasets, automating metadata annotation, calculating
  perturbation distances, and efficiently analyzing how cells respond to various stimuli like genetic
  modifications, drug treatments, and environmental changes.
type: software
license: Apache-2.0
repository-code: https://github.com/scverse/pertpy
url: https://pertpy.scverse.org/
keywords:
  - single-cell
  - perturbation
  - scverse
  - bioinformatics
  - computational-biology
  - scRNA-seq
  - CRISPR
  - Perturb-seq
authors:
  - family-names: Heumos
    given-names: Lukas
  - family-names: May
    given-names: Lilly
  - family-names: Peidli
    given-names: Stefan
  - family-names: Ostner
    given-names: Johannes
  - family-names: Sturm
    given-names: Gregor
  - family-names: Dann
    given-names: Emma
  - family-names: Ji
    given-names: Yuge
  - family-names: Zhang
    given-names: Xinyue
  - family-names: Wu
    given-names: Xichen
  - family-names: Green
    given-names: Tessa
  - family-names: Schumacher
    given-names: Antonia
preferred-citation:
  type: article
  title: "Pertpy: an end-to-end framework for perturbation analysis"
  journal: Nature Methods
  year: 2025
  doi: 10.1038/s41592-025-02909-7
  url: https://doi.org/10.1038/s41592-025-02909-7
  issn: 1548-7105
  publisher:
    name: Springer Nature
  authors:
    - family-names: Heumos
      given-names: Lukas
    - family-names: Ji
      given-names: Yuge
    - family-names: May
      given-names: Lilly
    - family-names: Green
      given-names: Tessa D.
    - family-names: Peidli
      given-names: Stefan
    - family-names: Zhang
      given-names: Xinyue
    - family-names: Wu
      given-names: Xichen
    - family-names: Ostner
      given-names: Johannes
    - family-names: Schumacher
      given-names: Antonia
    - family-names: Hrovatin
      given-names: Karin
    - family-names: Müller
      given-names: Michaela
    - family-names: Chong
      given-names: Faye
    - family-names: Sturm
      given-names: Gregor
    - family-names: Tejada
      given-names: Alejandro
    - family-names: Dann
      given-names: Emma
    - family-names: Dong
      given-names: Mingze
    - family-names: Pinto
      given-names: Gonçalo
    - family-names: Bahrami
      given-names: Mojtaba
    - family-names: Gold
      given-names: Ilan
    - family-names: Rybakov
      given-names: Sergei
    - family-names: Namsaraeva
      given-names: Altana
    - family-names: Moinfar
      given-names: Amir Ali
    - family-names: Zheng
      given-names: Zihe
    - family-names: Roellin
      given-names: Eljas
    - family-names: Mekki
      given-names: Isra
    - family-names: Sander
      given-names: Chris
    - family-names: Lotfollahi
      given-names: Mohammad
    - family-names: Schiller
      given-names: Herbert B.
    - family-names: Theis
      given-names: Fabian J.