From 0415cc510949fbaacb032847c671eddbb2fdf31d Mon Sep 17 00:00:00 2001 From: "seqan-actions[bot]" Date: Sat, 24 Jan 2026 13:35:07 +0100 Subject: [PATCH 1/2] [INFRA] Update CPM Packages --- cmake/CPM.cmake | 4 ++-- cmake/package-lock.cmake | 2 +- 2 files changed, 3 insertions(+), 3 deletions(-) diff --git a/cmake/CPM.cmake b/cmake/CPM.cmake index 81cc90a..43427c7 100644 --- a/cmake/CPM.cmake +++ b/cmake/CPM.cmake @@ -2,8 +2,8 @@ # # SPDX-FileCopyrightText: Copyright (c) 2019-2023 Lars Melchior and contributors -set (CPM_DOWNLOAD_VERSION 0.42.0) -set (CPM_HASH_SUM "2020b4fc42dba44817983e06342e682ecfc3d2f484a581f11cc5731fbe4dce8a") +set (CPM_DOWNLOAD_VERSION 0.42.1) +set (CPM_HASH_SUM "f3a6dcc6a04ce9e7f51a127307fa4f699fb2bade357a8eb4c5b45df76e1dc6a5") if (CPM_SOURCE_CACHE) set (CPM_DOWNLOAD_LOCATION "${CPM_SOURCE_CACHE}/cpm/CPM_${CPM_DOWNLOAD_VERSION}.cmake") diff --git a/cmake/package-lock.cmake b/cmake/package-lock.cmake index 1827b35..f5108f4 100644 --- a/cmake/package-lock.cmake +++ b/cmake/package-lock.cmake @@ -19,7 +19,7 @@ CPMDeclarePackage (hibf ) # sharg -set (SHARG_VERSION d3b6c025554fc28a6f94d475fc136894b441432e CACHE STRING "") +set (SHARG_VERSION 983dc3dc415d9fc193fb4dac110cc2ecac2ca4bc CACHE STRING "") CPMDeclarePackage (sharg NAME sharg GIT_TAG ${SHARG_VERSION} # main From b658556f88958fd80e7be5aee736940bc3117891 Mon Sep 17 00:00:00 2001 From: Enrico Seiler Date: Sat, 24 Jan 2026 18:45:36 +0100 Subject: [PATCH 2/2] fix: new sharg version --- cmake/package-lock.cmake | 5 +++-- test/cli_fastq_coversion_test.cpp | 1 + 2 files changed, 4 insertions(+), 2 deletions(-) diff --git a/cmake/package-lock.cmake b/cmake/package-lock.cmake index f5108f4..b309fdc 100644 --- a/cmake/package-lock.cmake +++ b/cmake/package-lock.cmake @@ -19,10 +19,11 @@ CPMDeclarePackage (hibf ) # sharg -set (SHARG_VERSION 983dc3dc415d9fc193fb4dac110cc2ecac2ca4bc CACHE STRING "") +set (SHARG_VERSION 1.2.1 CACHE STRING "") CPMDeclarePackage (sharg NAME sharg - GIT_TAG ${SHARG_VERSION} # main + VERSION ${SHARG_VERSION} + GIT_TAG ${SHARG_VERSION} GITHUB_REPOSITORY seqan/sharg-parser SYSTEM TRUE EXCLUDE_FROM_ALL TRUE diff --git a/test/cli_fastq_coversion_test.cpp b/test/cli_fastq_coversion_test.cpp index 66df9b2..b0366f6 100644 --- a/test/cli_fastq_coversion_test.cpp +++ b/test/cli_fastq_coversion_test.cpp @@ -13,6 +13,7 @@ TEST_F(fastq_to_fasta, no_options) app_test_result const result = execute_app("app-template"); std::string_view const expected{"Fastq-to-Fasta-Converter\n" "========================\n" + " app-template [-v|--verbose] [-o|--output path] [--] path\n" " Try -h or --help for more information.\n"}; EXPECT_SUCCESS(result);