Local morphometry for microscopy Z-stacks: vesicles, GUVs, RBCs, and seeded objects in crowded fields.
| Start here | When you need it |
|---|---|
| Getting started | Install, doctor, first analyze |
| Usage guide | Browser UI + CLI workflows |
| Metrics | What every CSV column means |
| Methods | Paste-ready methods supplement |
| Limitations | Calibration, tracking, profiles |
| Active surfaces | Experimental profile notes |
| Validation | Regression runs & scripts |
| Troubleshooting | Common failures |
| Distribution | Wheels, pipx, GitHub Releases |
| Citations | Libraries & data acknowledgements |
Assets used on GitHub live in public/. Product roadmap notes: ../improvements.md. Contributor guide: ../AGENTS.md.
Stack (TIFF / LSM / CZI)
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Inspect → Threshold / Sweep → Preview
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Analyze (seed · ROI · Z-range · profile)
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├── CSV metrics
├── Manifest + report
└── Mesh / mask export
