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Create SVG instruction notebook: code #1056

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Merged
jashapiro merged 22 commits into from
Aug 20, 2026
Merged

Create SVG instruction notebook: code #1056

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90b2497
Add initial svg notebook
jashapiro Aug 3, 2026
1f8cacf
Merge remote-tracking branch 'origin/master' into jashapiro/1046-svg-…
jashapiro Aug 3, 2026
6fb23e8
fix title
jashapiro Aug 3, 2026
31f0aa3
spelling updates
jashapiro Aug 3, 2026
0f8b2a4
missed a couple
jashapiro Aug 3, 2026
e152142
set live chunks
jashapiro Aug 10, 2026
808a673
Merge remote-tracking branch 'origin/master' into jashapiro/1046-svg-…
jashapiro Aug 10, 2026
0465f4a
Add calculation of moran mc results
jashapiro Aug 10, 2026
0073419
add pre-computed replicates
jashapiro Aug 11, 2026
9ba9508
Use labels for correlations
jashapiro Aug 11, 2026
8d5dc15
rename snakefile variables
jashapiro Aug 11, 2026
df8b02b
ignore unneeded snakemake output
jashapiro Aug 11, 2026
8688b27
typo fix
jashapiro Aug 11, 2026
acbaf0c
fix snakemake path
jashapiro Aug 11, 2026
64c39f3
Apply suggestions from code review
jashapiro Aug 18, 2026
4ceba79
Apply suggestions from code review
jashapiro Aug 18, 2026
d1c9f18
Merge branch 'master' into jashapiro/1046-svg-instruction
jashapiro Aug 19, 2026
a72a9fe
add todos
jashapiro Aug 19, 2026
d0fd09a
update qs2 ref name
jashapiro Aug 19, 2026
85f3108
Merge branch 'master' into jashapiro/1046-svg-instruction
jashapiro Aug 19, 2026
5fb3673
add seed
jashapiro Aug 19, 2026
71b2bf8
Merge remote-tracking branch 'origin/jashapiro/1046-svg-instruction' …
jashapiro Aug 19, 2026
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6 changes: 5 additions & 1 deletion components/dictionary.txt
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Original file line number Diff line number Diff line change
Expand Up @@ -92,6 +92,7 @@ conda
config
connectedness
CosMx
covariation
CPMs
CRC
csv
Expand Down Expand Up @@ -422,6 +423,7 @@ proliferative
proteasome
pseudobulks
pseudocount
punctate
punctum
QCs
QL
Expand Down Expand Up @@ -468,6 +470,8 @@ scRNA
Sebire
Sergushichev
setosa
SFE
SFEs
Shern
Singhal
SingleCellExperiment
Expand Down Expand Up @@ -572,8 +576,8 @@ WIPO
WNT
Xenium
Xenium's
XOA
xenograft
XOA
Yu
Zarr
zebrafish
Expand Down
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