MicrobeTrace v2.0.0

• Refactored entire codebase to Angular for improved scalability, performance, and usability
• Switched to Cytoscape.js as visualization engine for 2D Network for faster, more efficient rendering of large networks
• Added default dataset to allow new users to easily test MicrobeTrace's functionality
• Expanded functionality of multiple views including Bubble, EpiCurve, and Alignment Views
• Redesigned User Interface to make key features more visible and user-friendly

MicrobeTrace v0.9.1

Show loading modal with session

MicrobeTrace v0.9.0

Update api key for maps

v0.6.1

corrected MicrobeTrace_Manual extension

v0.5.0

• Substantial file processing speedup. MicrobeTrace can now reasonably manage sessions of up to 2000 sequences of ~1000 nucleotides.
• Redesigned the timeline to show cumulative or non-cumulative epi curves instead of nodes.
• Completely redesigned the phylogenetic tree view using a new library, TidyTree
• Enriched the Waterfall view with additional metadata from the entity of interest.
• Improvements to the Map View Data, specifically around matching County data based on County names (in conjunction with State names, of course) or FIPS Codes.
• Created an new "Aggregate" View, which performs a rudimentary group-by and count on any variable in your dataset.
• Caching has been re-written from scratch, and should now work more in-line with our expectations. If you're connected to the internet, you get the latest versions of the files. If not, you get cached versions.
• Added several new security features.
• Reduced the repository size.