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@GoekeLab

Göke Lab

Computational Transcriptomics - Third Generation Sequencing

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  1. sg-nex-data sg-nex-data Public

    Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project

    R 149 27

  2. bambu bambu Public

    Reference-guided transcript discovery and quantification for long read RNA-Seq data

    R 226 26

  3. xpore xpore Public

    Identification of differential RNA modifications from nanopore direct RNA sequencing

    Python 162 23

  4. m6anet m6anet Public

    Detection of m6A from direct RNA-Seq data

    Python 131 20

  5. bioinformatics-workflows bioinformatics-workflows Public

    minimal example implementations for bioinformatics workflow managers

    Python 281 50

  6. awesome-nanopore awesome-nanopore Public

    A curated list of awesome nanopore analysis tools.

    307 56

Repositories

Showing 10 of 17 repositories
  • bambu-singlecell-spatial Public

    Transcript discovery and quantification for long read single cell and spatial transcriptomics data using Bambu

    GoekeLab/bambu-singlecell-spatial’s past year of commit activity
    Nextflow 15 GPL-3.0 1 8 1 Updated Feb 19, 2026
  • bambu Public

    Reference-guided transcript discovery and quantification for long read RNA-Seq data

    GoekeLab/bambu’s past year of commit activity
    R 226 GPL-3.0 26 56 3 Updated Feb 19, 2026
  • rnome-minimal-nextflow-pipeline Public

    Nextflow pipeline used for aligning nanopore modBAM files using minimap2 (preserving modification tags) and summarising modifications using modkit. Used to process RNome data

    GoekeLab/rnome-minimal-nextflow-pipeline’s past year of commit activity
    Nextflow 0 MIT 0 0 0 Updated Feb 11, 2026
  • sg-nex-data Public

    Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project

    GoekeLab/sg-nex-data’s past year of commit activity
    R 149 27 11 0 Updated Jan 23, 2026
  • proActiv Public

    Estimation of Promoter Activity from RNA-Seq data

    GoekeLab/proActiv’s past year of commit activity
    R 57 16 12 0 Updated Jul 14, 2025
  • awesome-nanopore Public

    A curated list of awesome nanopore analysis tools.

    GoekeLab/awesome-nanopore’s past year of commit activity
    307 MIT 56 1 1 Updated Jul 2, 2025
  • m6anet Public

    Detection of m6A from direct RNA-Seq data

    GoekeLab/m6anet’s past year of commit activity
    Python 131 MIT 20 25 0 Updated May 19, 2025
  • xpore Public

    Identification of differential RNA modifications from nanopore direct RNA sequencing

    GoekeLab/xpore’s past year of commit activity
    Python 162 MIT 23 33 1 Updated Nov 7, 2024
  • NanoporeRNASeq Public

    Nanopore RNASeq data

    GoekeLab/NanoporeRNASeq’s past year of commit activity
    R 8 MIT 2 0 0 Updated Oct 25, 2022
  • nanoseq Public Forked from nf-core/nanoseq

    Nanopore demultiplexing, QC and alignment pipeline

    GoekeLab/nanoseq’s past year of commit activity
    Nextflow 4 MIT 106 0 0 Updated Dec 17, 2021

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