Add ome-zarr-py to omero_server_python_addons #454
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This is a proposal of one possible solution to a problem, or the start of a discussion... (I hope I've made the change in the correct place?)
Currently I have been running
register.pyhttps://github.com/BioNGFF/omero-import-utils/blob/main/metadata/register.pyon the pilot-idr9999 in the
/opt/omero/server/venv/environment and now that this script has zarr & dask as a dependency in BioNGFF/omero-import-utils#7 it's handy to have an environment with those packages.Also, it has been VERY useful to have
ome-zarr-pyinstalled in an environment on the server because we have OME-Zarr data there which we want to inspect via the ngff-validator, so we want to serve the data with CORS headers enabled, which is handled by the$ ome_zarr view /data/testing/...zarrcommand, with port forwarding to port 8000.Vanilla python http server with CORS requires a bit more code: e.g. https://gist.github.com/amriunix/00c4209ba7ecf384e925fc99d98658c5
cc @dominikl