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Revert .gitmodules and update submodule pointer for repos/builtin

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[release/2.1] Update netcdf-c from spack develop to fix missing plugins #2010

Revert .gitmodules and update submodule pointer for repos/builtin
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ubuntu-ci-c6a-x86_64-oneapi-ifx-build
succeeded May 13, 2026 in 2h 28m 7s