Skip to content
Navigation Menu
Sign in
Appearance settings
Platform
AI CODE CREATION
GitHub Copilot
Write better code with AI
GitHub Copilot app
Direct agents from issue to merge
MCP Registry
Integrate external tools
DEVELOPER WORKFLOWS
Actions
Automate any workflow
Codespaces
Instant dev environments
Issues
Plan and track work
Code Review
Manage code changes
Code Quality
Enforce quality at merge
APPLICATION SECURITY
GitHub Advanced Security
Find and fix vulnerabilities
Code security
Secure your code as you build
Secret protection
Stop leaks before they start
EXPLORE
Why GitHub
Documentation
Blog
Changelog
Marketplace
View all features
Solutions
BY COMPANY SIZE
Enterprises
Small and medium teams
Startups
Nonprofits
BY USE CASE
App Modernization
DevSecOps
DevOps
CI/CD
View all use cases
BY INDUSTRY
Healthcare
Financial services
Manufacturing
Government
View all industries
View all solutions
Resources
EXPLORE BY TOPIC
AI
Software Development
DevOps
Security
View all topics
EXPLORE BY TYPE
Customer stories
Events & webinars
Ebooks & reports
Business insights
GitHub Skills
SUPPORT & SERVICES
Documentation
Customer support
Community forum
Trust center
Partners
View all resources
Open Source
COMMUNITY
GitHub Sponsors
Fund open source developers
PROGRAMS
Security Lab
Maintainer Community
Accelerator
GitHub Stars
Archive Program
REPOSITORIES
Topics
Trending
Collections
Enterprise
ENTERPRISE SOLUTIONS
Enterprise platform
AI-powered developer platform
AVAILABLE ADD-ONS
GitHub Advanced Security
Enterprise-grade security features
Copilot for Business
Enterprise-grade AI features
Premium Support
Enterprise-grade 24/7 support
Pricing
Search
/
Sign in
Sign up
Appearance settings
You signed in with another tab or window.
Reload
to refresh your session.
You signed out in another tab or window.
Reload
to refresh your session.
You switched accounts on another tab or window.
Reload
to refresh your session.
Dismiss alert
{{ message }}
Uh oh!
There was an error while loading.
Please reload this page
.
OpenFreeEnergy
/
openfe
Public
Notifications
You must be signed in to change notification settings
Fork
52
Star
320
Code
Issues
388
Pull requests
38
Discussions
Actions
Projects
Wiki
Security and quality
0
Insights
Additional navigation options
Code
Issues
Pull requests
Discussions
Actions
Projects
Wiki
Security and quality
Insights
return partial convergence analysis if mbar fails for individual fraction
- #1984
#1984
Merged
IAlibay
merged 18 commits into
OpenFreeEnergy:main
OpenFreeEnergy/openfe:main
from
aqemia-benedict-tan:main
aqemia-benedict-tan/openfe:main
Copy head branch name to clipboard
Jul 16, 2026
Conversation
Commits
18
(18)
Checks
Files changed
Merged
return partial convergence analysis if mbar fails for individual fraction
#1984
IAlibay
merged 18 commits into
OpenFreeEnergy:main
OpenFreeEnergy/openfe:main
from
aqemia-benedict-tan:main
aqemia-benedict-tan/openfe:main
Copy head branch name to clipboard
Commits
Commits on Jun 2, 2026
store partial convergence analysis if mbar fails for individual fraction
aqemia-benedict-tan
committed
59ae19f
View commit details
Copy full SHA for 59ae19f
Browse repository at this point
Commits on Jun 4, 2026
Refactor forwards/reverse estimates with helper function
aqemia-benedict-tan
committed
4aa683f
View commit details
Copy full SHA for 4aa683f
Browse repository at this point
Add tests for MBAR failure returning individual NaN during convergence analysis
aqemia-benedict-tan
committed
2e00d1d
View commit details
Copy full SHA for 2e00d1d
Browse repository at this point
Commits on Jun 5, 2026
mypy can't follow openff.units/pint's Quantity typing
aqemia-benedict-tan
committed
fbbe6f7
View commit details
Copy full SHA for fbbe6f7
Browse repository at this point
ruff needs double spacing
aqemia-benedict-tan
committed
0cced56
View commit details
Copy full SHA for 0cced56
Browse repository at this point
Commits on Jun 11, 2026
Update to raise NaN for both directions even if only one fails
aqemia-benedict-tan
committed
7b7dba3
View commit details
Copy full SHA for 7b7dba3
Browse repository at this point
update tests for returning NaN in both directions for a given fraction where MBAR fails
aqemia-benedict-tan
committed
42ee838
View commit details
Copy full SHA for 42ee838
Browse repository at this point
add units for helper function
aqemia-benedict-tan
committed
dbf9b71
View commit details
Copy full SHA for dbf9b71
Browse repository at this point
return None if final MBAR estimate for fraction=1.0 errors
aqemia-benedict-tan
committed
ce66327
View commit details
Copy full SHA for ce66327
Browse repository at this point
add Benedict to authors
aqemia-benedict-tan
committed
4ce6e8a
View commit details
Copy full SHA for 4ce6e8a
Browse repository at this point
updated forwards and reverse convergence analysis
aqemia-benedict-tan
committed
e5d52da
View commit details
Copy full SHA for e5d52da
Browse repository at this point
Commits on Jun 12, 2026
Merge branch 'main' into main
IAlibay
authored
d3b12f7
View commit details
Copy full SHA for d3b12f7
Browse repository at this point
Commits on Jun 16, 2026
remove dead try/except from get_forward_and_reverse_analysis
aqemia-benedict-tan
committed
8cd3275
View commit details
Copy full SHA for 8cd3275
Browse repository at this point
set stacklevel=2 in warning
aqemia-benedict-tan
committed
9232453
View commit details
Copy full SHA for 9232453
Browse repository at this point
Commits on Jun 25, 2026
Merge branch 'OpenFreeEnergy:main' into main
aqemia-benedict-tan
authored
9625cd7
View commit details
Copy full SHA for 9625cd7
Browse repository at this point
Commits on Jun 29, 2026
Merge branch 'main' into main
IAlibay
authored
48e7e54
View commit details
Copy full SHA for 48e7e54
Browse repository at this point
Update src/openfe/protocols/openmm_utils/multistate_analysis.py
IAlibay
authored
252309c
View commit details
Copy full SHA for 252309c
Browse repository at this point
Commits on Jul 16, 2026
Merge branch 'main' into main
IAlibay
authored
683dcc1
View commit details
Copy full SHA for 683dcc1
Browse repository at this point
You can’t perform that action at this time.