This repository is a compact collection of training materials for ProteoBench, with a focus on notebook-based tutorials that are easy to run and explore.
These notebooks are the main entry points for learning and hands-on use:
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tutorial_jupyter_notebooks/local_usage_walkthrough.ipynb A walkthrough for running the workflow locally, preparing inputs, and following the analysis step by step.
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tutorial_jupyter_notebooks/example_visualisations.ipynb A set of example visualisations to help interpret output tables and plots for common use cases.
The remaining folders are supplementary and intended as background or reference material rather than the main learning path:
- data — example input files and small datasets used in teaching and testing.
- posthoc_analyses — additional post-hoc analyses and more detailed reference work for deeper investigation.
For most users, start with the tutorial notebooks above. The supporting folders are useful for context, reproducibility, and extended examples.