Updates to get tutorial ready for the workshop

README.md

@@ -1 +1,11 @@
-# contraband-tutorial
+---
+author: Rong Zhang,Fábio K. Mendes
+level: Intermediate
+title: Contraband tutorial
+subtitle: Total-evidence dating and trait-evolution evolutionary inference using phylogenetic multivariate Brownian motion models
+beastversion: 2.7.7
+---
+
+# Contraband tutorial
+
+This tutorial is currently only available as a [PDF]( {{site.baseurl}}/tutorials/contraband-tutorial/main.pdf ).

master-refs.bib

@@ -123,16 +123,17 @@ @article{bouckaert2019beast
 
 @article{mitov20,
 	author = {Venelin Mitov and Krzysztof Bartoszek and Georgios Asimomitis and Tanja Stadler},
-	journal = {{Theor. Popul. Biol.}},
+	journal = {Theoretical Population Biology},
 	pages = {66--78},
 	publisher = {Elsevier},
 	title = {Fast likelihood calculation for multivariate {G}aussian phylogenetic models with shifts},
 	volume = {131},
-	year = {2020}}
+	year = {2020}
+}
 
 @article{ronquist12,
 	author = {Ronquist, Fredrik and Klopfstein, Seraina and Vilhelmsen, Lars and Schulmeister, Susanne and Murray, Debra L and Rasnitsyn, Alexandr P},
-	journal = {{S}yst. {B}iol.},
+	journal = {Systematic Biology},
 	number = {6},
 	pages = {973--999},
 	publisher = {Oxford University Press},
@@ -155,7 +156,7 @@ @article{zhang24
 
 @article{alvarez19,
 	author = {Sandra {\'{A}lvarez--Carretero} and Anjali Goswami and Ziheng Yang and Mario {dos Reis}},
-	journal = {{Syst. Biol.}},
+  journal= {Systematic Biology},
 	number = {6},
 	pages = {967--986},
 	publisher = {Oxford University Press},
@@ -166,7 +167,7 @@ @article{alvarez19
 
 	@article{barrett21,
 	author = {Barrett, Paul Z and Hopkins, Samantha SB and Price, Samantha A},
-	journal = {{J}. {V}ertebr. {P}aleontol.},
+	journal = {J. Vertebr. Paleontol.},
 	number = {1},
 	pages = {e1923523},
 	publisher = {Taylor \& Francis},
@@ -178,7 +179,7 @@ @article{barrett21
 	@article{douglas2021,
   title={Adaptive dating and fast proposals: {R}evisiting the phylogenetic relaxed clock model},
   author={Douglas, Jordan and Zhang, Rong and Bouckaert, Remco},
-  journal={{PL}o{S} computational biology},
+  journal={PLoS computational biology},
   volume={17},
   number={2},
   pages={e1008322},
@@ -189,7 +190,7 @@ @article{douglas2021
 @article{lewis2001,
   title={A likelihood approach to estimating phylogeny from discrete morphological character data},
   author={Lewis, Paul O},
-  journal={Systematic biology},
+  journal={Systematic Biology},
   volume={50},
   number={6},
   pages={913--925},
@@ -209,5 +210,13 @@ @article{gavryushkina2014
   publisher={Public Library of Science San Francisco, USA}
 }
 
-
+@ARTICLE{heath2014,
+  author = {Heath, Tracy A and Huelsenbeck, John P and Stadler, Tanja},
+  title = {The fossilized birth-death process for coherent calibration of divergence-time
+	estimates},
+  journal = PNAS,
+  year = {2014},
+  volume = {111},
+  pages = {E2957--E2966}
+}