* ABOUT * Web front-end for Pmine is a data-ming tool that mines information from Clinvar and gives a percentage data visualization for each gene search. A search can be performed with both the Gene symbol or start and stop positions.
Source code can be obtained here: https://github.com/pirekupcode/Pmine
Demo for Pmine mining tool: http://bfx.aap.jhu.edu/ppireku1/Pmine/mine/mine.html?search_term=tp63&submit=submit
Utilizes tools published at:
https://google-developers.appspot.com/chart/interactive/docs/gallery/piechart
*Visualization: Pie Chart
*Pmine is used to search for genes and their related SNPs and also get a summary visaulization of how pathogenic they are.
*Raw data was obtained from Clinvar FTP onMon 29 Apr 2019 10∶33∶52 AM EDT specifically the most updated (variant summary.txt.gz) size:36.1 MB (36,137,579 bytes)
REQUIREMENTS Pmine is a front end mining tool and has no prerequisites however it needs to be run on a browser that supports java-script.
DETAILED USAGE
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You can access Pmine using the link below : http://bfx.aap.jhu.edu/ppireku1/Pmine/mine/mine.html
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There are three filter search options ie: GeneType, Start and Stop
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You can search with the gene symbol or the actual start or end position after you have picked your filter.
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Would have to find a new server to deploy it on. Discontinued from institution
Results example: http://bfx.aap.jhu.edu/ppireku1/Pmine/mine/mine.html?search_term=tp63&submit=submit