scGTN

scGTN: Deep Siamese Graph Transformer Network for Single-cell RNA Sequencing Clustering

Requirements

pip install -r requirements.txt

Usage

python train_scGTN.py --dataset Muraro_human_Pancreas_cell --n_top_genes 2000

Data Format

Place .h5 files in the datasets/ folder.

Project Structure

scGTN/
├── config.py          # Model configuration
├── model.py           # scGTN model
├── layer.py           # Loss functions
├── preprocess.py      # Data preprocessing
├── utils.py           # Utility functions
├── train_scGTN.py     # Training script
├── datasets/          # Data folder
└── README.md