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Pull requests: aqlaboratory/openfold-3

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Pull requests list

feat: download_subset script
#298 opened Jul 6, 2026 by jandom Collaborator • Draft
@jandom
refactor: prepare deepspeed for ejection safe-to-test Internal only label used to indicate PRs that are ready for automated CI testing.
#292 opened Jul 2, 2026 by jandom Collaborator • Draft
@jandom
6
refactor: silence benign nvcc warning safe-to-test Internal only label used to indicate PRs that are ready for automated CI testing.
#291 opened Jul 2, 2026 by jandom Collaborator • Draft
@jandom
Do boolean mask sums directly in fp32 safe-to-test Internal only label used to indicate PRs that are ready for automated CI testing.
#282 opened Jun 27, 2026 by GMNGeoffrey Contributor Loading…
2
ci: support custom AMD runners safe-to-test Internal only label used to indicate PRs that are ready for automated CI testing.
#280 opened Jun 25, 2026 by jandom Collaborator Loading…
@jandom
1
feat: add CUDA ball-query backend for smooth lDDT loss
#261 opened Jun 15, 2026 by heathcliff233 Loading…
12
Fix degeneracy in attention kernel backward tests safe-to-test Internal only label used to indicate PRs that are ready for automated CI testing.
#258 opened Jun 12, 2026 by GMNGeoffrey Contributor Loading…
Add CIF template-based generating example notebook safe-to-test Internal only label used to indicate PRs that are ready for automated CI testing.
#255 opened Jun 11, 2026 by sukritsingh Loading…
@jandom
6
Kernels revamp
#253 opened Jun 11, 2026 by sdvillal Contributor • Draft
1
Profiling tools safe-to-test Internal only label used to indicate PRs that are ready for automated CI testing.
#251 opened Jun 9, 2026 by christinaflo Collaborator Loading…
5
Reduce peak memory usage
#248 opened Jun 8, 2026 by GMNGeoffrey Contributor • Draft
2
3
Reduce get_token_frame_atoms memory usage safe-to-test Internal only label used to indicate PRs that are ready for automated CI testing.
#244 opened Jun 2, 2026 by GMNGeoffrey Contributor Loading…
1
2
Chunk large LayerNorm inputs to work around torch bug safe-to-test Internal only label used to indicate PRs that are ready for automated CI testing.
#231 opened May 26, 2026 by GMNGeoffrey Contributor Loading…
1
Avoid flattening and expanding broadcast dimensions when chunking
#213 opened May 5, 2026 by GMNGeoffrey Contributor Loading…
2
4
Replace scipy's truncnorm.rvs with nn.init.trunc_normal_ to make model load faster safe-to-test Internal only label used to indicate PRs that are ready for automated CI testing.
#178 opened Apr 13, 2026 by rizsp Contributor Loading…
@rizsp
11
use torch.gather() to make batched_gather() more efficient enhancement New feature or request model Related to the model definition sketch This is an idea/sketch rather than a mergeable PR, significant work needed to advance needed training Relating to the training pipeline
#135 opened Mar 14, 2026 by asdfefbhjy • Draft
3
feat(inference): Add support for custom residue numbering (resolves #58)
#69 opened Dec 6, 2025 by chodec Contributor Loading…
19
Preserve Raw ColabFold MSA Output Files
#35 opened Nov 12, 2025 by qurat-ul-ain95 Contributor Loading…
1
7
ProTip! Updated in the last three days: updated:>2026-07-05.