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breseq
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Merge branch 'master' into worktree-CNery-integration
build-and-test
#57:
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77916ce
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jeffreybarrick
12m 53s
master
master
12m 53s
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Feed CNery coverage tables instead of a breseq output folder
build-and-test
#56:
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11m 7s
master
master
11m 7s
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Restore /usr/local as the default install prefix
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#55:
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11m 4s
master
master
11m 4s
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Give PD evidence a genome-wide false-positive criterion
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#54:
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3m 6s
master
master
3m 6s
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Merge branch 'worktree-failing-long-tests'
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#53:
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Merge branch 'worktree-more-CNery-output-integration'
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#52:
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Merge branch 'worktree-add-read-group-to-bam'
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#51:
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master
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Draw the ori-ter ramp as the straight lines it actually is
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#50:
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master
12m 26s
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Predict deletions and amplifications from copy number evidence
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#49:
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master
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Count PD pairs over the same set the evidence plot draws
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#48:
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Correct the PD seed z for how far it is actually dispersed
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#47:
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Bound the PD null at max_span, instead of at the length of the genome
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#46:
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master
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Merge worktree-sra-download-for-long-tests: remove long-tests CI work…
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#45:
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Merge worktree-sra-download-for-long-tests: gzipped references and on…
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#44:
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Merge worktree-sra-download-for-long-tests: gzipped references and on…
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Merge branch 'master' into worktree-sra-download-for-long-tests
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Merge worktree-pair-distance-evidence: Pair Distance (PD) evidence
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#43:
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Merge worktree-missing-pair-evidence: fix MP use-after-free
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#42:
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Merge worktree-missing-pair-evidence: reproducible read simulation an…
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#41:
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Merge worktree-missing-pair-evidence: Missing Pair (MP) evidence and …
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#40:
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Merge worktree-nanopore-guards: re-add the nanopore preset as -x/--na…
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#39:
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Merge worktree-polymorphism-mode: correct stale option defaults in he…
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#38:
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Merge worktree-duplicate-discordant-pair-error-2: DP placement, evide…
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#37:
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Merge worktree-duplicate-discordant-pair-error-2: fold DP candidates …
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#36:
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Merge worktree-show-frequency-CI: print a zero frequency as 0%
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#35:
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