- Useful Website Links
- Common Bioinformatics Tools (Curated Spreadsheet)
- My learning repositories
- My project repositories
📌 This e-book documents my ongoing journey in bioinformatics engineering, integrating concepts from data science, software development, and biomedical research. Its aim is to systematically curate this learning process and develop a collection of searchable and reusable knowledge resources.
For a complete overview, see the 📚 Table of Contents.
- Next-generation sequencing data analysis, including DNA-seq, RNA-seq, single-cell RNA-seq, and microbiome workflows
- Data science methodologies, covering data preprocessing, analysis, and visualization
- Statistical foundations and applied statistical analysis for biomedical and computational research
- DevOps practices, including containerization, CI/CD, workflow automation, and reproducible research environments
- Backend development, focusing on API design, server-side logic, and service architecture
- Frontend development, with modern web technologies and frameworks
- Cloud and networking concepts, including cloud infrastructure, container orchestration, and networking fundamentals
- Core computer science topics, such as algorithms, data structures, and system-level concepts
- Programming language syntax and usage, with practical examples across commonly used languages
- Miscellaneous topics and supplementary notes
- snakemake-rnaseq pipeline: A modular and reproducible RNA-seq analysis pipeline supporting Docker, Conda, and CI/CD—designed for both research and teaching applications.
This e-book is actively maintained and will be updated on an ongoing basis. Comments, corrections, and scholarly or technical feedback are welcome.
🌐 Personal Website: Visit My Website
📩 Contact: benson106075@gmail.com
🔗 LinkedIn: Benson Lee
💻 GitHub: benson1231
🐳 Docker Hub: benson1231