Scripts to download and curate breast cancer datasets from InSilicoDB
Dependencies:
Install the R/Bioconductior dependencies:
pp <- c("InSilicoDb", "Biobase", "BiocGenerics", "org.Hs.eg.db", "survival", "survcomp", "genefu", "mRMRe", "WriteXLS")
source("http://bioconductor.org/biocLite.R")
myrepos <- biocinstallRepos()
rr <- biocLite(pkgs=pp, dependencies=TRUE, type="source", destdir=".")
TODO
- Weighted survival does not work properly (number of patients per time points should be "unweighted")
- METABRIC and STAT1?