refactor(nest): drop leading underscore from module files in _nest_network/_nest_spatial/_nest_base

.gitattributes

@@ -1,3 +1,86 @@
+# Cross-platform line-ending policy (Linux / macOS / Windows).
+#
+# Everything text is stored as LF in the repository and checked out as LF on
+# every OS, so a file has identical bytes on Linux, macOS, and Windows. Git for
+# Windows handles LF transparently and modern editors (VS Code, PyCharm, etc.)
+# respect it, so there is no need for per-developer core.autocrlf settings.
+# The only exceptions are Windows-native shell scripts, which require CRLF.
+#
+# After changing this file, run `git add --renormalize .` once to rewrite any
+# files that were previously committed with mixed/CRLF endings.
+
+# Auto-detect text files and normalize them to LF in the repo and working tree.
 * text=auto eol=lf
-*.bat text eol=crlf
-*.cmd text eol=crlf
+
+# ---------------------------------------------------------------------------
+# Source & text — force LF, enable language-aware diffs where useful
+# ---------------------------------------------------------------------------
+*.py      text diff=python
+*.pyi     text diff=python
+*.pyx     text diff=python
+*.pxd     text diff=python
+*.rst     text
+*.md      text diff=markdown
+*.txt     text
+*.cfg     text
+*.ini     text
+*.toml    text
+*.yml     text
+*.yaml    text
+*.json    text
+*.ipynb   text
+*.sh      text eol=lf
+Makefile  text eol=lf
+
+# ---------------------------------------------------------------------------
+# Windows-only scripts — must be CRLF to run on Windows
+# ---------------------------------------------------------------------------
+*.bat     text eol=crlf
+*.cmd     text eol=crlf
+*.ps1     text eol=crlf
+
+# ---------------------------------------------------------------------------
+# Binary — never normalize, never diff as text
+# ---------------------------------------------------------------------------
+*.png     binary
+*.jpg     binary
+*.jpeg    binary
+*.gif     binary
+*.ico     binary
+*.svg     binary
+*.pdf     binary
+*.mat     binary
+*.npy     binary
+*.npz     binary
+*.h5      binary
+*.hdf5    binary
+*.pkl     binary
+*.pickle  binary
+*.so      binary
+*.pyd     binary
+*.dylib   binary
+*.dll     binary
+*.gz      binary
+*.bz2     binary
+*.xz      binary
+*.zip     binary
+
+# ---------------------------------------------------------------------------
+# GitHub Linguist — keep language stats focused on the library source
+# ---------------------------------------------------------------------------
+docs/**       linguist-documentation
+examples/**   linguist-documentation
+*.ipynb       linguist-documentation
+changelog.md  linguist-documentation
+
+# ---------------------------------------------------------------------------
+# git archive / source exports — drop dev-only paths
+# ---------------------------------------------------------------------------
+.github/         export-ignore
+.gitattributes   export-ignore
+.gitignore       export-ignore
+.claudeignore    export-ignore
+.claude/         export-ignore
+.idea/           export-ignore
+dev/             export-ignore
+develop/         export-ignore

.github/ISSUE_TEMPLATE/bug_report.md

@@ -1,70 +1,70 @@
----
-name: Bug Report
-about: Report a bug or unexpected behavior to help us improve brainpy.state
-title: '[BUG] '
-labels: bug
-assignees: ''
----
-
-## Bug Description
-
-**Describe the bug**
-A clear and concise description of what the bug is.
-
-## To Reproduce
-
-**Minimal code example to reproduce the issue:**
-
-```python
-import brainpy
-
-# Your code here that demonstrates the bug
-```
-
-**Steps to reproduce:**
-1.
-2.
-3.
-
-## Expected Behavior
-
-What you expected to happen.
-
-## Actual Behavior
-
-What actually happened. Include the full error message and traceback if applicable.
-
-```
-Paste error message/traceback here
-```
-
-## Environment
-
-Please provide the following information:
-
-- **brainpy.state Version:** [e.g., 0.0.1]
-- **Python Version:** [e.g., 3.10.5]
-- **JAX Version:** [e.g., 0.4.30]
-- **Operating System:** [e.g., Ubuntu 22.04, macOS 13.0, Windows 11]
-- **Hardware:** [e.g., CPU only, CUDA GPU, TPU]
-- **Installation method:** [e.g., pip, conda, from source]
-
-**Additional context:**
-
-```python
-import brainpy
-
-print(brainpy_state.__version__)
-# Add any other relevant version info
-```
-
-## Additional Context
-
-Add any other context about the problem here (e.g., related issues, potential causes, attempted solutions).
-
-## Checklist
-
-- [ ] I have checked for duplicate issues
-- [ ] I have provided a minimal code example to reproduce the bug
-- [ ] I have included the full error message/traceback
+---
+name: Bug Report
+about: Report a bug or unexpected behavior to help us improve brainpy.state
+title: '[BUG] '
+labels: bug
+assignees: ''
+---
+
+## Bug Description
+
+**Describe the bug**
+A clear and concise description of what the bug is.
+
+## To Reproduce
+
+**Minimal code example to reproduce the issue:**
+
+```python
+import brainpy
+
+# Your code here that demonstrates the bug
+```
+
+**Steps to reproduce:**
+1.
+2.
+3.
+
+## Expected Behavior
+
+What you expected to happen.
+
+## Actual Behavior
+
+What actually happened. Include the full error message and traceback if applicable.
+
+```
+Paste error message/traceback here
+```
+
+## Environment
+
+Please provide the following information:
+
+- **brainpy.state Version:** [e.g., 0.0.1]
+- **Python Version:** [e.g., 3.10.5]
+- **JAX Version:** [e.g., 0.4.30]
+- **Operating System:** [e.g., Ubuntu 22.04, macOS 13.0, Windows 11]
+- **Hardware:** [e.g., CPU only, CUDA GPU, TPU]
+- **Installation method:** [e.g., pip, conda, from source]
+
+**Additional context:**
+
+```python
+import brainpy
+
+print(brainpy_state.__version__)
+# Add any other relevant version info
+```
+
+## Additional Context
+
+Add any other context about the problem here (e.g., related issues, potential causes, attempted solutions).
+
+## Checklist
+
+- [ ] I have checked for duplicate issues
+- [ ] I have provided a minimal code example to reproduce the bug
+- [ ] I have included the full error message/traceback
 - [ ] I have provided environment information

.github/ISSUE_TEMPLATE/config.yml

@@ -1,11 +1,11 @@
-blank_issues_enabled: true
-contact_links:
-  - name: 📚 Documentation
-    url: https://brainx.chaobrain.com/brainpy-state/
-    about: Check the documentation for guides, tutorials, and API reference
-  - name: 💬 GitHub Discussions
-    url: https://github.com/chaobrain/brainpy.state/discussions
-    about: Ask questions and discuss ideas with the community
-  - name: 🔒 Security Vulnerability
-    url: https://github.com/chaobrain/brainpy.state/security/advisories/new
-    about: Report security vulnerabilities privately (do not create public issues)
+blank_issues_enabled: true
+contact_links:
+  - name: 📚 Documentation
+    url: https://brainx.chaobrain.com/brainpy-state/
+    about: Check the documentation for guides, tutorials, and API reference
+  - name: 💬 GitHub Discussions
+    url: https://github.com/chaobrain/brainpy.state/discussions
+    about: Ask questions and discuss ideas with the community
+  - name: 🔒 Security Vulnerability
+    url: https://github.com/chaobrain/brainpy.state/security/advisories/new
+    about: Report security vulnerabilities privately (do not create public issues)

.github/ISSUE_TEMPLATE/feature_request.md

@@ -1,58 +1,58 @@
----
-name: Feature Request
-about: Suggest a new idea or improvement for brainpy.state
-title: '[FEATURE] '
-labels: enhancement
-assignees: ''
----
-
-## Feature Description
-
-**Is your feature request related to a problem? Please describe.**
-A clear and concise description of what the problem is. Ex. I'm always frustrated when [...]
-
-**Describe the solution you'd like**
-A clear and concise description of what you want to happen.
-
-## Motivation and Use Case
-
-**Why is this feature important?**
-Explain the motivation for this feature and who would benefit from it.
-
-**Example use case:**
-
-```python
-import brainpy
-
-# Example code showing how you would like to use this feature
-# This helps us understand your vision
-```
-
-## Proposed Implementation (Optional)
-
-**How do you envision this working?**
-If you have ideas about how this could be implemented, share them here.
-
-**API design (if applicable):**
-```python
-# Proposed API or interface
-```
-
-## Alternatives Considered
-
-**What alternatives have you considered?**
-Describe alternative solutions or features you've considered and why they don't fully address your needs.
-
-## Additional Context
-
-Add any other context, screenshots, references to related work, or examples from other libraries.
-
-**Related issues/PRs:**
-- #issue_number
-
-## Checklist
-
-- [ ] I have checked for duplicate feature requests
-- [ ] I have provided a clear use case and motivation
-- [ ] I have described the desired behavior
-- [ ] I have considered and described alternatives
+---
+name: Feature Request
+about: Suggest a new idea or improvement for brainpy.state
+title: '[FEATURE] '
+labels: enhancement
+assignees: ''
+---
+
+## Feature Description
+
+**Is your feature request related to a problem? Please describe.**
+A clear and concise description of what the problem is. Ex. I'm always frustrated when [...]
+
+**Describe the solution you'd like**
+A clear and concise description of what you want to happen.
+
+## Motivation and Use Case
+
+**Why is this feature important?**
+Explain the motivation for this feature and who would benefit from it.
+
+**Example use case:**
+
+```python
+import brainpy
+
+# Example code showing how you would like to use this feature
+# This helps us understand your vision
+```
+
+## Proposed Implementation (Optional)
+
+**How do you envision this working?**
+If you have ideas about how this could be implemented, share them here.
+
+**API design (if applicable):**
+```python
+# Proposed API or interface
+```
+
+## Alternatives Considered
+
+**What alternatives have you considered?**
+Describe alternative solutions or features you've considered and why they don't fully address your needs.
+
+## Additional Context
+
+Add any other context, screenshots, references to related work, or examples from other libraries.
+
+**Related issues/PRs:**
+- #issue_number
+
+## Checklist
+
+- [ ] I have checked for duplicate feature requests
+- [ ] I have provided a clear use case and motivation
+- [ ] I have described the desired behavior
+- [ ] I have considered and described alternatives