cssr-tools · daavid00 · Nov 12, 2025 · Nov 12, 2025
diff --git a/docs/_sources/tccs-13.rst.txt b/docs/_sources/tccs-13.rst.txt
@@ -4,7 +4,7 @@ TCCS-13
 
 Here we describe the steps to reproduce the results in:
 
-Landa-Marbán, D., Sandve, T.H., and Gasda, S.E. 2025. A Coarsening Approach to the Troll Aquifer Model. Submitted to SINTEF Proceedings. https://doi.org/10.13140/RG.2.2.24886.41283
+* Landa-Marbán, D., Sandve, T.H., and Gasda, S.E. 2025. A Coarsening Approach to the Troll Aquifer Model. Submitted to SINTEF Proceedings. https://doi.org/10.13140/RG.2.2.24886.41283
 
 To this end, the deck `ORIGINAL.DATA <https://github.com/cssr-tools/expreccs/blob/main/tccs-13/ORIGINAL.DATA>`_ has the 
 same dimensions and number of total cells (12,450,809) as the Troll aquifer model, and the rest of the properties are 
@@ -23,6 +23,13 @@ For the first figures, `plopm <https://github.com/cssr-tools/plopm.git>`_ and `p
     pip install git+https://github.com/cssr-tools/plopm.git
     pip install git+https://github.com/cssr-tools/pycopm.git
 
+To run the optimization, `Everest <https://github.com/equinor/everest-tutorials>`_ is needed,
+which is installed via `ert <https://github.com/equinor/ert>`_ when `pycopm <https://github.com/cssr-tools/pycopm>`_ is installed with the command above.
+
+.. note::
+
+    Python 3.14 was not supported for ert at the time this was written, then you need Python 3.12 or 3.13.
+
 The following commands generate Figures 1 and 2 (a few features such as the transmissibilities, wells, and sensor are added using PowerPoint) using 
 `FIG1.DATA <https://github.com/cssr-tools/expreccs/blob/main/tccs-13/methodology/FIG1.DATA>`_:
 
@@ -36,7 +43,7 @@ The following commands generate Figures 1 and 2 (a few features such as the tran
     plopm -i FIG1 -v poro -c '#bfebf2' -z 0 -grid 'black,1e0' -y '[5,-1]' -ylnum 5 -xlnum 7 -r 0 -remove 0,0,1,1 -d 24,16 -f 60 -save fig1
     plopm -i 'COARSENED_PERMS FIG1 COARSENED_TRANS' -v 'pressure - 0pressure' -subfigs 3,1 -r 1 -z 0 -delax 1 -y '[5,-1]' -cformat .0f -grid 'black,1e0' -cbsfax 0.1,0.95,0.8,0.02 -suptitle 0 -clabel 'Pressure increase [bar]' -cnum 5 -t 'Coarsened (permeabilities)  Before coarsening  Coarsened (transmissibilities)' -d 24,48 -f 80 -save fig2
 
-For Figs. 3b, 5, 6, and 8, 9, and 10:
+For Figs. 3b, 5, 6, and 8, 9, and 10 using ORIGINAL.DATA in the `expreccs/tccs-13/original <https://github.com/cssr-tools/expreccs/blob/main/tccs-13/original/>`_ folder:
 
 .. code-block:: bash
 
@@ -53,21 +60,13 @@ For Figs. 3b, 5, 6, and 8, 9, and 10:
     plopm -i 'ORIGINAL' -v 'imbnum' -s ',,1:217' -r 0 -translate '[-495000,-6.605e6]' -x '[0,95000]' -xunits km -xlnum 2 -y '[0,160000]' -yunits km -yformat .0f -ylnum 2 -xformat .0f -remove 0,0,1,1 -c '203;203;203' -save fig10a
     plopm -i 'ORIGINAL COARSENED' -v 'overpres' -s ',,1:217 ,,1:5' -translate '[-495000,-6.605e6]' -x '[0,95000]' -xunits km -xlnum 2 -y '[0,160000]' -yunits km -yformat .0f -ylnum 2 -xformat .0f -subfigs 1,2 -d 16,12 -cbsfax 0.1,0.95,0.8,0.02 -f 24 -cnum 5 -suptitle 0 -clabel 'Overpressure (p - p$_{lim}$) [bar], t=25 years' -delax 1 -remove 1,0,0,0 -t 'Troll aquifer model  Coarsened version' -b '[-126.7,-1.1]' -c cet_diverging_rainbow_bgymr_45_85_c67 -save fig10bc
 
-Figs. 4 and 7 are generated using `ResInsight <https://resinsight.org>`_. To run the optimization, `Everest <https://github.com/equinor/everest>`_ is needed. Since it has been merged to 
-`ERT <https://github.com/equinor/ert>`_, it seems there are some issues using it via ERT. Then, the walk around is to use the version before merging. One way to get this installed is to
-create a new virtual environment (to avoid version conflicts, tested with Python 3.13) and execute:
-
-.. code-block:: bash
-
-    pip install ert==11.0.8
-    pip install git+https://github.com/equinor/everest.git
-    pip install mako
-
-Once installed, then you could adapt the coarsened generated files in the `coarsened folder <https://github.com/cssr-tools/expreccs/blob/main/tccs-13/coarsened/>`_ to run the optimization:
+Figs. 4 and 7 are generated using `ResInsight <https://resinsight.org>`_. 
+
+Using the coarsened files from pycopm, you could adapt the exisiting files in the `coarsened folder <https://github.com/cssr-tools/expreccs/blob/main/tccs-13/coarsened/>`_ to run the optimization:
 
 .. code-block:: bash
 
-    everest run coarsened.yml
+    everest run coarsened.yml --skip-prompt
 
 .. note::
 
@@ -79,7 +78,7 @@ After the study, to generate Fig. 11, execute the `postprocessing.py file <https
 
     python3 postprocessing.py
 
-Finally, you can look at the improved well locations in the generated figures/optimal_solution folder, and take those locations in the ORGININAL.DATA deck 
+Finally, you can look at the improved well locations in the generated figures/optimal_solution folder, and take those locations into the ORGININAL.DATA deck 
 and save it as IMPROVED.DATA, similar to the coarsened version to COARSENED_IMPROVED.DATA, to generate Fig. 12:
 
 .. code-block:: bash

diff --git a/docs/searchindex.js b/docs/searchindex.js
diff --git a/docs/tccs-13.html b/docs/tccs-13.html
@@ -84,7 +84,9 @@
   <section id="tccs-13">
 <h1>TCCS-13<a class="headerlink" href="#tccs-13" title="Link to this heading"></a></h1>
 <p>Here we describe the steps to reproduce the results in:</p>
-<p>Landa-Marbán, D., Sandve, T.H., and Gasda, S.E. 2025. A Coarsening Approach to the Troll Aquifer Model. Submitted to SINTEF Proceedings. <a class="reference external" href="https://doi.org/10.13140/RG.2.2.24886.41283">https://doi.org/10.13140/RG.2.2.24886.41283</a></p>
+<ul class="simple">
+<li><p>Landa-Marbán, D., Sandve, T.H., and Gasda, S.E. 2025. A Coarsening Approach to the Troll Aquifer Model. Submitted to SINTEF Proceedings. <a class="reference external" href="https://doi.org/10.13140/RG.2.2.24886.41283">https://doi.org/10.13140/RG.2.2.24886.41283</a></p></li>
+</ul>
 <p>To this end, the deck <a class="reference external" href="https://github.com/cssr-tools/expreccs/blob/main/tccs-13/ORIGINAL.DATA">ORIGINAL.DATA</a> has the
 same dimensions and number of total cells (12,450,809) as the Troll aquifer model, and the rest of the properties are
 set to common homogeneous values from literature, while the well locations match the ones described in the TCCS-13 paper.
@@ -99,6 +101,12 @@ <h1>TCCS-13<a class="headerlink" href="#tccs-13" title="Link to this heading">
 pip<span class="w"> </span>install<span class="w"> </span>git+https://github.com/cssr-tools/pycopm.git
 </pre></div>
 </div>
+<p>To run the optimization, <a class="reference external" href="https://github.com/equinor/everest-tutorials">Everest</a> is needed,
+which is installed via <a class="reference external" href="https://github.com/equinor/ert">ert</a> when <a class="reference external" href="https://github.com/cssr-tools/pycopm">pycopm</a> is installed with the command above.</p>
+<div class="admonition note">
+<p class="admonition-title">Note</p>
+<p>Python 3.14 was not supported for ert at the time this was written, then you need Python 3.12 or 3.13.</p>
+</div>
 <p>The following commands generate Figures 1 and 2 (a few features such as the transmissibilities, wells, and sensor are added using PowerPoint) using
 <a class="reference external" href="https://github.com/cssr-tools/expreccs/blob/main/tccs-13/methodology/FIG1.DATA">FIG1.DATA</a>:</p>
 <div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>pycopm<span class="w"> </span>-i<span class="w"> </span>FIG1.DATA<span class="w"> </span>-z<span class="w"> </span><span class="m">1</span>:4<span class="w"> </span>-m<span class="w"> </span>all<span class="w"> </span>-a<span class="w"> </span>max<span class="w"> </span>-w<span class="w"> </span>COARSENED_TRANS<span class="w"> </span>-l<span class="w"> </span>TRANS<span class="w"> </span>-t<span class="w"> </span><span class="m">2</span>
@@ -110,7 +118,7 @@ <h1>TCCS-13<a class="headerlink" href="#tccs-13" title="Link to this heading">
 plopm<span class="w"> </span>-i<span class="w"> </span><span class="s1">&#39;COARSENED_PERMS FIG1 COARSENED_TRANS&#39;</span><span class="w"> </span>-v<span class="w"> </span><span class="s1">&#39;pressure - 0pressure&#39;</span><span class="w"> </span>-subfigs<span class="w"> </span><span class="m">3</span>,1<span class="w"> </span>-r<span class="w"> </span><span class="m">1</span><span class="w"> </span>-z<span class="w"> </span><span class="m">0</span><span class="w"> </span>-delax<span class="w"> </span><span class="m">1</span><span class="w"> </span>-y<span class="w"> </span><span class="s1">&#39;[5,-1]&#39;</span><span class="w"> </span>-cformat<span class="w"> </span>.0f<span class="w"> </span>-grid<span class="w"> </span><span class="s1">&#39;black,1e0&#39;</span><span class="w"> </span>-cbsfax<span class="w"> </span><span class="m">0</span>.1,0.95,0.8,0.02<span class="w"> </span>-suptitle<span class="w"> </span><span class="m">0</span><span class="w"> </span>-clabel<span class="w"> </span><span class="s1">&#39;Pressure increase [bar]&#39;</span><span class="w"> </span>-cnum<span class="w"> </span><span class="m">5</span><span class="w"> </span>-t<span class="w"> </span><span class="s1">&#39;Coarsened (permeabilities)  Before coarsening  Coarsened (transmissibilities)&#39;</span><span class="w"> </span>-d<span class="w"> </span><span class="m">24</span>,48<span class="w"> </span>-f<span class="w"> </span><span class="m">80</span><span class="w"> </span>-save<span class="w"> </span>fig2
 </pre></div>
 </div>
-<p>For Figs. 3b, 5, 6, and 8, 9, and 10:</p>
+<p>For Figs. 3b, 5, 6, and 8, 9, and 10 using ORIGINAL.DATA in the <a class="reference external" href="https://github.com/cssr-tools/expreccs/blob/main/tccs-13/original/">expreccs/tccs-13/original</a> folder:</p>
 <div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>flow<span class="w"> </span>ORIGINAL.DATA<span class="w"> </span>--enable-opm-rst-file<span class="o">=</span><span class="nb">true</span><span class="w"> </span>--linear-solver<span class="o">=</span>cpr_trueimpes<span class="w"> </span>--time-step-control<span class="o">=</span>newtoniterationcount<span class="w"> </span>--newton-min-iterations<span class="o">=</span><span class="m">1</span><span class="w"> </span>--tolerance-cnv-relaxed<span class="o">=</span>1e-2<span class="w"> </span>--relaxed-max-pv-fraction<span class="o">=</span><span class="m">0</span>
 pycopm<span class="w"> </span>-i<span class="w"> </span>ORIGINAL.DATA<span class="w"> </span>-t<span class="w"> </span><span class="m">2</span><span class="w"> </span>-a<span class="w"> </span>max<span class="w"> </span>-z<span class="w"> </span><span class="m">1</span>:30,31:56,57:111,112:116,117:217<span class="w"> </span>-w<span class="w"> </span>COARSENED<span class="w"> </span>-l<span class="w"> </span>C
 flow<span class="w"> </span>COARSENED.DATA<span class="w"> </span>--enable-opm-rst-file<span class="o">=</span><span class="nb">true</span><span class="w"> </span>--linear-solver<span class="o">=</span>cpr_trueimpes<span class="w"> </span>--time-step-control<span class="o">=</span>newtoniterationcount<span class="w"> </span>--newton-min-iterations<span class="o">=</span><span class="m">1</span><span class="w"> </span>--tolerance-cnv-relaxed<span class="o">=</span>1e-2<span class="w"> </span>--relaxed-max-pv-fraction<span class="o">=</span><span class="m">0</span>
@@ -125,16 +133,9 @@ <h1>TCCS-13<a class="headerlink" href="#tccs-13" title="Link to this heading">
 plopm<span class="w"> </span>-i<span class="w"> </span><span class="s1">&#39;ORIGINAL COARSENED&#39;</span><span class="w"> </span>-v<span class="w"> </span><span class="s1">&#39;overpres&#39;</span><span class="w"> </span>-s<span class="w"> </span><span class="s1">&#39;,,1:217 ,,1:5&#39;</span><span class="w"> </span>-translate<span class="w"> </span><span class="s1">&#39;[-495000,-6.605e6]&#39;</span><span class="w"> </span>-x<span class="w"> </span><span class="s1">&#39;[0,95000]&#39;</span><span class="w"> </span>-xunits<span class="w"> </span>km<span class="w"> </span>-xlnum<span class="w"> </span><span class="m">2</span><span class="w"> </span>-y<span class="w"> </span><span class="s1">&#39;[0,160000]&#39;</span><span class="w"> </span>-yunits<span class="w"> </span>km<span class="w"> </span>-yformat<span class="w"> </span>.0f<span class="w"> </span>-ylnum<span class="w"> </span><span class="m">2</span><span class="w"> </span>-xformat<span class="w"> </span>.0f<span class="w"> </span>-subfigs<span class="w"> </span><span class="m">1</span>,2<span class="w"> </span>-d<span class="w"> </span><span class="m">16</span>,12<span class="w"> </span>-cbsfax<span class="w"> </span><span class="m">0</span>.1,0.95,0.8,0.02<span class="w"> </span>-f<span class="w"> </span><span class="m">24</span><span class="w"> </span>-cnum<span class="w"> </span><span class="m">5</span><span class="w"> </span>-suptitle<span class="w"> </span><span class="m">0</span><span class="w"> </span>-clabel<span class="w"> </span><span class="s1">&#39;Overpressure (p - p$_{lim}$) [bar], t=25 years&#39;</span><span class="w"> </span>-delax<span class="w"> </span><span class="m">1</span><span class="w"> </span>-remove<span class="w"> </span><span class="m">1</span>,0,0,0<span class="w"> </span>-t<span class="w"> </span><span class="s1">&#39;Troll aquifer model  Coarsened version&#39;</span><span class="w"> </span>-b<span class="w"> </span><span class="s1">&#39;[-126.7,-1.1]&#39;</span><span class="w"> </span>-c<span class="w"> </span>cet_diverging_rainbow_bgymr_45_85_c67<span class="w"> </span>-save<span class="w"> </span>fig10bc
 </pre></div>
 </div>
-<p>Figs. 4 and 7 are generated using <a class="reference external" href="https://resinsight.org">ResInsight</a>. To run the optimization, <a class="reference external" href="https://github.com/equinor/everest">Everest</a> is needed. Since it has been merged to
-<a class="reference external" href="https://github.com/equinor/ert">ERT</a>, it seems there are some issues using it via ERT. Then, the walk around is to use the version before merging. One way to get this installed is to
-create a new virtual environment (to avoid version conflicts, tested with Python 3.13) and execute:</p>
-<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>pip<span class="w"> </span>install<span class="w"> </span><span class="nv">ert</span><span class="o">==</span><span class="m">11</span>.0.8
-pip<span class="w"> </span>install<span class="w"> </span>git+https://github.com/equinor/everest.git
-pip<span class="w"> </span>install<span class="w"> </span>mako
-</pre></div>
-</div>
-<p>Once installed, then you could adapt the coarsened generated files in the <a class="reference external" href="https://github.com/cssr-tools/expreccs/blob/main/tccs-13/coarsened/">coarsened folder</a> to run the optimization:</p>
-<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>everest<span class="w"> </span>run<span class="w"> </span>coarsened.yml
+<p>Figs. 4 and 7 are generated using <a class="reference external" href="https://resinsight.org">ResInsight</a>.</p>
+<p>Using the coarsened files from pycopm, you could adapt the exisiting files in the <a class="reference external" href="https://github.com/cssr-tools/expreccs/blob/main/tccs-13/coarsened/">coarsened folder</a> to run the optimization:</p>
+<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>everest<span class="w"> </span>run<span class="w"> </span>coarsened.yml<span class="w"> </span>--skip-prompt
 </pre></div>
 </div>
 <div class="admonition note">
@@ -145,7 +146,7 @@ <h1>TCCS-13<a class="headerlink" href="#tccs-13" title="Link to this heading">
 <div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>python3<span class="w"> </span>postprocessing.py
 </pre></div>
 </div>
-<p>Finally, you can look at the improved well locations in the generated figures/optimal_solution folder, and take those locations in the ORGININAL.DATA deck
+<p>Finally, you can look at the improved well locations in the generated figures/optimal_solution folder, and take those locations into the ORGININAL.DATA deck
 and save it as IMPROVED.DATA, similar to the coarsened version to COARSENED_IMPROVED.DATA, to generate Fig. 12:</p>
 <div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>flow<span class="w"> </span>IMPROVED.DATA<span class="w"> </span>--enable-opm-rst-file<span class="o">=</span><span class="nb">true</span><span class="w"> </span>--linear-solver<span class="o">=</span>cpr_trueimpes<span class="w"> </span>--time-step-control<span class="o">=</span>newtoniterationcount<span class="w"> </span>--newton-min-iterations<span class="o">=</span><span class="m">1</span><span class="w"> </span>--tolerance-cnv-relaxed<span class="o">=</span>1e-2<span class="w"> </span>--relaxed-max-pv-fraction<span class="o">=</span><span class="m">0</span>
 flow<span class="w"> </span>COARSENED_IMPROVED.DATA<span class="w"> </span>--enable-opm-rst-file<span class="o">=</span><span class="nb">true</span><span class="w"> </span>--linear-solver<span class="o">=</span>cpr_trueimpes<span class="w"> </span>--time-step-control<span class="o">=</span>newtoniterationcount<span class="w"> </span>--newton-min-iterations<span class="o">=</span><span class="m">1</span><span class="w"> </span>--tolerance-cnv-relaxed<span class="o">=</span>1e-2<span class="w"> </span>--relaxed-max-pv-fraction<span class="o">=</span><span class="m">0</span>