Issues

• Galaxy greeting swallows a prompt passed on the orbit command line

  galaxyproject/orbit#635 · Filter by author dannon opened on Oct 31, 2026

• Map-over proposals: per-element jobs never reconcile as conformant

  galaxyproject/orbit#626 · Filter by author dannon opened on Oct 28, 2026

• Proposal gate accepts datasets whose format the tool input cannot take (TSV approved into NanoPlot FASTQ slot)

  galaxyproject/orbit#618 · Filter by author scottcain opened on Oct 27, 2026
  1

• No circuit breaker on identical tool-call retry loops; small models grind on unwinnable errors

  galaxyproject/orbit#617 · Filter by author scottcain opened on Oct 27, 2026

• Turn-silence watchdog kills in-flight compaction (compaction_start is not a pause case)

  galaxyproject/orbit#616 · Filter by author scottcain opened on Oct 27, 2026

• /approve silently opens a second confirm modal, blocks the brain, and is invisible to the model

  galaxyproject/orbit#611 · Filter by author scottcain opened on Oct 26, 2026
  1

• Plan-then-approve is prompt-enforced only; small local models skip it entirely

  enhancement
  galaxyproject/orbit#606 · Filter by author scottcain opened on Oct 24, 2026
  2

• Local endpoints: compaction is an hour-class event; trim what enters the context

  enhancement
  galaxyproject/orbit#604 · Filter by author scottcain opened on Oct 24, 2026
  2

• Custom endpoints get a hardcoded 128k context window: ask the endpoint, and leave tokenizer margin

  enhancement
  galaxyproject/orbit#603 · Filter by author scottcain opened on Oct 24, 2026
  2

• Cross-provider session resume derails small local models; no discoverable way to start a new session

  bug
  galaxyproject/orbit#602 · Filter by author scottcain opened on Oct 24, 2026
  3

• Dev runs can't read safeStorage-encrypted keys: misleading agent error, silent model-discovery failure, plaintext re-entry

  bug
  galaxyproject/orbit#599 · Filter by author scottcain opened on Oct 24, 2026
  1

• [olit] Browser-compatible web and literature search

  galaxyproject/orbit#596 · Filter by author guerler opened on Oct 22, 2026

• Hosted Orbit: run the brain server-side at orbit.galaxyproject.org

  galaxyproject/orbit#590 · Filter by author dannon opened on Oct 20, 2026
  

• Rename Loom to Orbit: one name for the CLI, the app and the repo

  galaxyproject/orbit#579 · Filter by author dannon opened on Oct 15, 2026
  1

• Olit: Feedback and Issue Tracking

  galaxyproject/orbit#572 · Filter by author guerler opened on Oct 11, 2026

• Bump pi to 1.1.0, and stop the packed-tarball smoke test from floating

  galaxyproject/orbit#571 · Filter by author dannon opened on Oct 10, 2026

• Orbit: a checkbox for lessons.enabled

  galaxyproject/orbit#570 · Filter by author dannon opened on Oct 10, 2026

• Replace the hand-rolled Galaxy calls in galaxy-api.ts with galaxy-ops operations

  galaxyproject/orbit#569 · Filter by author dannon opened on Oct 10, 2026

• Browser Shell: reunifying Olit with Orbit's core

  galaxyproject/orbit#567 · Filter by author dannon opened on Oct 8, 2026

• Stopping the agent shows "Agent stopped" as a chat error

  galaxyproject/orbit#564 · Filter by author dannon opened on Oct 7, 2026

• Web shell doesn't show prompt rejections

  galaxyproject/orbit#563 · Filter by author dannon opened on Oct 7, 2026

• mcp.json migration leaves plain adapter-era entries untranslated, so pi reads their values differently

  galaxyproject/orbit#560 · Filter by author dannon opened on Oct 7, 2026

• Re-announces every already-known 'failing' invocation on every agent restart (directory switch, config save)

  galaxyproject/orbit#538 · Filter by author scottcain opened on Oct 1, 2026

• Answer delivered diagnostic questions before continuing long analysis work

  galaxyproject/orbit#525 · Filter by author nekrut opened on Sep 28, 2026

• Methods-section export — draft methods + provenance supplement

  galaxyproject/orbit#512 · Filter by author d-callan opened on Sep 23, 2026 · Harness rails
  1