Issues

• Installation of the "MutSpec (Mutational Spectrum Analysis) toolbox"

  galaxyproject/usegalaxy-tools#1777 · Filter by author drzafarmedgen opened on Oct 22, 2026

• Install updated orthofinder_onlygroups 2.5.5+galaxy2

  site/orgtools/update
  galaxyproject/usegalaxy-tools#1775 · Filter by author jennaj opened on Oct 21, 2026

• Correction for beast2_beast at UseGalaxy.eu

  bugsite/eu
  galaxyproject/usegalaxy-tools#1734 · Filter by author jennaj opened on Sep 23, 2026

• Request: supply missing reference for Prodigal (re: # Other genetic codes 1-25)

  bug
  galaxyproject/usegalaxy-tools#1707 · Filter by author jennaj opened on Sep 7, 2026

• Configuration: Correct HISAT2 2.2.3+galaxy0 at UseGalaxy.org

  site/org
  galaxyproject/usegalaxy-tools#1677 · Filter by author jennaj opened on Aug 13, 2026

• Dependency issues openbabel_filter/openbabel_filter ctb_filter

  bug
  galaxyproject/usegalaxy-tools#1669 · Filter by author jennaj opened on Aug 11, 2026

• Bug: dependency issue cshl_fastx_barcode_splitter 1.0.1 at org re "Permission denied"

  bugsite/org
  galaxyproject/usegalaxy-tools#1608 · Filter by author jennaj opened on Jul 15, 2026

• Tool Request: LC-MS Peak Picker (XCMS CentWave)

  galaxyproject/usegalaxy-tools#1539 · Filter by author hardiksood21 opened on Jun 9, 2026
  3

• Error with interactive_tool_pavian at UseGalaxy.org

  Bug

  galaxyproject/usegalaxy-tools#1502 · Filter by author jennaj opened on May 21, 2026

• Download GTDB-Tk mock DB and add this to CVMFS.

  galaxyproject/usegalaxy-tools#1490 · Filter by author SantaMcCloud opened on May 11, 2026

• Configration issue fastp 1.3.3+galaxy0 at ORG

  galaxyproject/usegalaxy-tools#1486 · Filter by author jennaj opened on May 8, 2026

• Suspected configuration issue with msconvert 3.0.20287.7

  galaxyproject/usegalaxy-tools#1485 · Filter by author jennaj opened on May 8, 2026

• Dependency issue plant_tribes_gene_family_classifier/1.0.3.0

  site/org
  galaxyproject/usegalaxy-tools#1438 · Filter by author jennaj opened on Apr 1, 2026

• Request: increase memory allocation for sinto_barcode/0.10.1+galaxy0

  tools/resources
  galaxyproject/usegalaxy-tools#1435 · Filter by author jennaj opened on Mar 30, 2026

• Request: Installing data managers for Liana

  galaxyproject/usegalaxy-tools#1422 · Filter by author khaled196 opened on Mar 23, 2026

• Configuration issue snippy 4.6.0+galaxy0 && 4.5.0

  bug
  galaxyproject/usegalaxy-tools#1415 · Filter by author jennaj opened on Mar 17, 2026
  3

• Memory allocation metamdbg_asm/1.3.1+galaxy0

  tools/resources
  galaxyproject/usegalaxy-tools#1407 · Filter by author jennaj opened on Mar 13, 2026

• Bug: Jbrowse fails to find HTML outputs for Preview in 26.0

  bug
  galaxyproject/usegalaxy-tools#1380 · Filter by author jennaj opened on Mar 3, 2026

• Request: increase resources for optitype/1.3.5+galaxy0 at usegalaxy.org

  tools/resources
  galaxyproject/usegalaxy-tools#1375 · Filter by author jennaj opened on Feb 25, 2026
  3

• Bug gi2taxonomy/Fetch Taxonomic Ranks/1.1.0

  bugsite/*
  galaxyproject/usegalaxy-tools#1368 · Filter by author jennaj opened on Feb 19, 2026
  1

• Tool installation request gwtc_analysis (Astronomy)

  galaxyproject/usegalaxy-tools#1385 · Filter by author danielsentenac opened on Jan 28, 2026
  6

• Request to add MitoBIM tool (repo ID: 6434f7d2f5b62d00)

  galaxyproject/usegalaxy-tools#1249 · Filter by author 233bunny opened on Dec 11, 2025

• Bug: correct R depenency error with ggplot2_heatmap2/3.3.0+galaxy0

  bug
  galaxyproject/usegalaxy-tools#1236 · Filter by author jennaj opened on Dec 6, 2025

• Request: include add_column_headers 0.1.3 at UseGalaxy servers (currently only at UseGalaxy.fr)

  tools/new
  galaxyproject/usegalaxy-tools#1231 · Filter by author jennaj opened on Dec 3, 2025

• Request: increase memory allocation for openbabel_compound_convert/3.1.1+galaxy1

  site/orgtools/resources
  galaxyproject/usegalaxy-tools#1210 · Filter by author jennaj opened on Nov 24, 2025