Issues

• Use filenames as code block labels instead of <shell>, <python>

  documentationstatus:in progress
  hpc-carpentry/hpc-workflows#43 · Filter by author florence-bockting opened on May 24, 2026

• Explain config.yaml options and fix inconsistent jobs value in profile section

  documentationstatus:in progress
  hpc-carpentry/hpc-workflows#42 · Filter by author florence-bockting opened on May 24, 2026

• Add explicit shell commands for file system operations

  documentationstatus:in progresstype:discussion
  hpc-carpentry/hpc-workflows#41 · Filter by author florence-bockting opened on May 24, 2026

• Decide on a (descriptive) convention for placeholders in commands

  documentationstatus:in progress
  hpc-carpentry/hpc-workflows#40 · Filter by author florence-bockting opened on May 24, 2026

• Explanation of options when introducing new commands

  documentationstatus:in progress
  hpc-carpentry/hpc-workflows#39 · Filter by author florence-bockting opened on May 24, 2026

• Provide more information about "keywords" (Python/snakemake)

  documentationstatus:in progress
  hpc-carpentry/hpc-workflows#38 · Filter by author florence-bockting opened on May 24, 2026

• Add GitHub templates for issues and pull requests

  good first issuestatus:in progresstype: template and tools
  hpc-carpentry/hpc-workflows#36 · Filter by author florence-bockting opened on May 24, 2026

• Lesson reference URL not available

  hpc-carpentry/hpc-workflows#33 · Filter by author mahermanns opened on May 11, 2026

• data zip file link is a stub

  hpc-carpentry/hpc-workflows#25 · Filter by author guyer opened on Aug 7, 2024
  2

• Workflows not being updated

  hpc-carpentry/hpc-workflows#18 · Filter by author ocaisa opened on Jun 5, 2024
  2

• Tweaking the use of wildcards

  hpc-carpentry/hpc-workflows#11 · Filter by author ocaisa opened on Sep 7, 2023

• explain Snakemake dot notation

  hpc-carpentry/hpc-workflows#9 · Filter by author tkphd opened on Aug 3, 2023

• overwriting output when snakefile changes

  hpc-carpentry/hpc-workflows#8 · Filter by author tkphd opened on Aug 3, 2023

• define DAG

  enhancement
  hpc-carpentry/hpc-workflows#7 · Filter by author tkphd opened on Aug 3, 2023
  1

• Add a wrap-up episode

  hpc-carpentry/hpc-workflows#6 · Filter by author tobyhodges opened on Aug 3, 2023

• Snakemake has Flux support

  hpc-carpentry/hpc-workflows#2 · Filter by author ocaisa opened on Apr 22, 2023
  1