Skip to content

🔧 Update new Data Types and Experimental Strategies #14

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Open
wants to merge 2 commits into
base: main
Choose a base branch
from
Open

🔧 Update new Data Types and Experimental Strategies #14

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
2 commits
Select commit Hold shift + click to select a range
8370908
:wrench: Update new Data Types and Experimental Strategies
a-l-holmes Aug 15, 2025
6edd42d
Merge branch 'main' into study_obs_profile
a-l-holmes Aug 15, 2025
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
25 changes: 25 additions & 0 deletions input/fsh/codesystems/CodeSystem-DataType.fsh
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -132,3 +132,28 @@ Description: "Data Types Used in INCLUDE Datasets"
* #Variant-Calling-Metrics "Variant Calling Metrics"
* #WGS-Metrics "WGS Metrics"
* #WXS-Metrics "WXS Metrics"
* #Age-at-Event|Latency "Age at Event|Latency"
* #Aligned-reads "Aligned reads"
* #Aligned-reads-index "Aligned reads index"
* #Anthropometrics "Anthropometrics"
* #Anthropometrics|Social-Determinants-of-Health "Anthropometrics|Social Determinants of Health"
* #Assay-Metadata "Assay Metadata"
* #Average-physical-activity-measures "Average physical activity measures"
* #Brain-Volume|Brain-Functional-Connectivity|Brain-Structural-Connectivity|Brain-Blood-Flow "Brain Volume|Brain Functional Connectivity|Brain Structural Connectivity|Brain Blood Flow"
* #Co-occurring-Conditions "Co-occurring Conditions"
* #Demographic "Demographic"
* #Demographics|Co-occurring-Conditions "Demographics|Co-occurring Conditions"
* #Demographics|Co-occurring-Conditions|MRI-Quality "Demographics|Co-occurring Conditions|MRI Quality"
* #Demographic|Co-occurring-Conditions|Interventions|Social-Determinants-of-Health "Demographic|Co-occurring Conditions|Interventions|Social Determinants of Health"
* #Demographic|Co-occurring-Conditions|Lab-Measures "Demographic|Co-occurring Conditions|Lab Measures"
* #Dictionary "Dictionary"
* #Gene-expression-quantifications "Gene expression quantifications"
* #Interventions "Interventions"
* #Lab-Measures "Lab Measures"
* #Multitasking-Test|Paired-Associate-Learning|Reaction-Time "Multitasking Test|Paired-Associate Learning|Reaction Time"
* #Read-Pairs "Read Pairs"
* #Self-Determination-Inventory "Self-Determination Inventory"
* #Sleep-evaluation|Sleep-questionnaire "Sleep evaluation|Sleep questionnaire"
* #Sleep-evaluation|Sleep-questionnaire|Co-occurring-Conditions "Sleep evaluation|Sleep questionnaire|Co-occurring Conditions"
* #Stratification/cohort/randomization-variables "Stratification/cohort/randomization variables"
* #VO2-Measures "VO2 Measures"
7 changes: 7 additions & 0 deletions input/fsh/codesystems/CodeSystem-ExperimentalStrategy.fsh
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -12,3 +12,10 @@ Description: "Experimental Strategies"
* #Multiplex-Immunoassay "Multiplex Immunoassay"
* #WGS "Whole Genome Sequencing"
* #RNA-Seq "RNA-Seq"
* #BCRseq "BCRseq"
* #TCRseq "TCRseq"
* #MRI "MRI"
* #Structural-MRI "Structural MRI"
* #Resting-state-fMRI "Resting-state fMRI"
* #Diffusion-tensor-imaging "Diffusion tensor imaging"
* #Arterial-spin-labeling "Arterial spin labeling"
2 changes: 1 addition & 1 deletion input/fsh/codesystems/CodeSystem-StudyDesign.fsh
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -8,7 +8,7 @@ Description: "Study Designs Used in INCLUDE Datasets"
* ^experimental = false
* ^publisher = "NCPI FHIR Works"
* ^content = #fragment
* #case_control "Case Control"
* #case_control "Case-Control"
* #case_set "Case Set"
* #control_set "Control Set"
* #clinical_trial "Clinical Trial"
Expand Down