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michaeltconnelly/README.md

Michael T. Connelly

Hello, and welcome! My name is Mike Connelly, I am an evolutionary biologist that studies cnidarian genomics to discover key innovations in early animal evolution and understand how host-microbe interactions impact evolutionary processes. My overarching goal is to generate discoveries that can be translated to improve human and ecosystem health. I am committed to using advanced computational techniques and deep knowledge of evolutionary biology, immunology, and microbiology to develop new algorithms and uncover insights from 'omics data.

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  1. coral_antibiotics_physiology coral_antibiotics_physiology Public

    These scripts and data are for the analysis of physiology (IPAM fluorometry and respirometry), transcriptome and microbiome data for the publication "Antibiotics reduce Pocillopora coral-associated…

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  2. EAPSI_Pocillopora_AxH EAPSI_Pocillopora_AxH Public

    Scripts for analysis of EAPSI Pocillopora transcriptomes from stable reef sites Houwan and Wanglitung in antibiotics, heat stress, combined, and control treatments

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  3. EAPSI_Pocillopora_LPS EAPSI_Pocillopora_LPS Public

    Scripts and data for RNAseq analysis of EAPSI Pocillopora transcriptomes from stable reef sites Houwan and Wanglitung in LPS and control treatments

    Shell 1

  4. etp_pocillopora_gskim etp_pocillopora_gskim Public

    Analysis code for ETP Pocillopora species delimitation analysis

    Shell 1