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_bibliography/papers.bib

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@string{aps = {American Physical Society,}}
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@article{Gao2025,
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abbr = {},
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bibtex_show = {true},
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title = {On Factors that Influence Deep Learning-Based Dose Prediction of Head and Neck Tumors},
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author = {Gao, Ruochen and Mody, Prerak and Rao, Chinmay S. and Dankers, Frank and Staring, Marius},
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journal = {Physics in Medicine and Biology},
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volume = {},
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pages = {},
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month = {},
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year = {2025},
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pdf = {2025_j_PMB.pdf},
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html = {},
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arxiv = {},
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code = {},
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abstract = {<i>Objective.</i> This study investigates key factors influencing deep learning-based dose prediction models for head and neck cancer radiation therapy (RT). The goal is to evaluate model accuracy, robustness, and computational efficiency, and to identify key components necessary for optimal performance.<br><i>Approach.</i> We systematically analyze the impact of input and dose grid resolution, input type, loss function, model architecture, and noise on model performance. Two datasets are used: a public dataset (OpenKBP) and an in-house clinical dataset (LUMC). Model performance is primarily evaluated using two metrics: dose score and dose-volume histogram (DVH) score.<br><i>Main results.</i> High-resolution inputs improve prediction accuracy (dose score and DVH score) by 8.6-13.5\% compared to low resolution. Using a combination of CT, planning target volumes (PTVs), and organs-at-risk (OARs) as input significantly enhances accuracy, with improvements of 57.4-86.8\% over using CT alone. Integrating mean absolute error (MAE) loss with value-based and criteria-based DVH loss functions further boosts DVH score by 7.2-7.5\% compared to MAE loss alone. In the robustness analysis, most models show minimal degradation under Poisson noise (0-0.3 Gy) but are more susceptible to adversarial noise (0.2-7.8 Gy). Notably, certain models, such as SwinUNETR, demonstrate superior robustness against adversarial perturbations.<br><i>Significance.</i> These findings highlight the importance of optimizing deep learning models and provide valuable guidance for achieving more accurate and reliable radiotherapy dose prediction.},
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}
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@article{Verheijen2025,
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abbr = {},
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bibtex_show = {true},

_bibliography/papers_conf.bib

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booktitle = {Statistical Atlases and Computational Modeling of the Heart (STACOM)},
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address = {Marrakech, Morocco},
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series = {Lecture Notes in Computer Science},
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volume = {},
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pages = {},
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volume = {15448},
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pages = {453 -- 463},
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month = {October},
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year = {2024},
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pdf = {2024_c_STACOM.pdf},
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html = {https://doi.org/10.1007/978-3-031-87756-8_44},
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arxiv = {},
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abstract = {Cardiac magnetic resonance imaging (CMR) is a crucial tool for diagnosing and treating cardiac diseases. However, the lengthy scanning time remains a significant drawback. To address this, accelerated imaging techniques have been introduced by undersampling k-space, which reduces the quality of the resulting images. Recent advancements in deep learning have aimed to expedite the scanning process while maintaining the high image quality. However, deep learning models still struggle to adapt to different sampling modes, and achieving generalization across a wide range of undersampling factors remains challenging. Therefore, an effective universal model for processing random undersampling is essential and promising. In this work, we introduce UPCMR, an unrolled model designed for random sampling CMR reconstruction. This model incorporates two kinds of learnable prompts, undersampling-specific prompt and spatial-specific prompt, and combines them with the UNet structure in each block, aiming to provide an effective and versatile solution for the above challenge.},

assets/pdf/2024_c_STACOM.pdf

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