Issues

• openscientist sometimes only does literature review when asked to analyze data

  openscientist-io/openscientist#307 · Filter by author cmungall opened on Oct 9, 2026

• Plan: systems-biology simulation support (model discovery → sandbox simulation → bundle export → external compute)

  openscientist-io/openscientist#305 · Filter by author justaddcoffee opened on Oct 7, 2026
  2

• Allowing OS to run large simulations

  openscientist-io/openscientist#303 · Filter by author cmungall opened on Oct 6, 2026
  3

• Sorting users in Admin view

  openscientist-io/openscientist#298 · Filter by author DEnglish73 opened on Sep 29, 2026

• Allow a job owner to make a job publicly viewable

  openscientist-io/openscientist#296 · Filter by author cmungall opened on Sep 28, 2026
  1

• re-joining an interactive mode session doesn't allow. chat

  openscientist-io/openscientist#285 · Filter by author cmungall opened on Aug 29, 2026

• README links two docs that do not exist

  documentation
  openscientist-io/openscientist#280 · Filter by author justaddcoffee opened on Aug 21, 2026

• Air-gapped mode does not work on main — 3 PRs to prioritise

  airgap-blocker
  openscientist-io/openscientist#279 · Filter by author justaddcoffee opened on Aug 21, 2026
  1

• consider ingesting/accessing literature from OpenAlex

  openscientist-io/openscientist#274 · Filter by author justaddcoffee opened on Aug 21, 2026

• allow login from non-gmail email addresses

  openscientist-io/openscientist#270 · Filter by author justaddcoffee opened on Aug 18, 2026

• Create an organization/project system

  openscientist-io/openscientist#269 · Filter by author cmungall opened on Aug 14, 2026

• Job queue has no per-user fairness, and its ordering is accidentally LIFO

  openscientist-io/openscientist#268 · Filter by author justaddcoffee opened on Aug 13, 2026
  2

• omp: MCP tools intermittently unavailable for a whole job, silently (7/10 runs)

  openscientist-io/openscientist#263 · Filter by author justaddcoffee opened on Aug 11, 2026

• No notification about approval

  openscientist-io/openscientist#258 · Filter by author nlharris opened on Aug 6, 2026

• Air-gapped agent container: HOME stays /root after setpriv privilege drop

  openscientist-io/openscientist#245 · Filter by author justaddcoffee opened on Jul 23, 2026

• make a 'feedback' button on OpenScientist for capturing bug reports/feature requests from users on live site

  openscientist-io/openscientist#224 · Filter by author justaddcoffee opened on Jul 13, 2026

• Can't start research job on mobile

  openscientist-io/openscientist#223 · Filter by author justaddcoffee opened on Jul 13, 2026

• Reimplement UI in Dioxus

  openscientist-io/openscientist#222 · Filter by author caufieldjh opened on Jul 10, 2026

• Air-gapped mode: docker-socket-proxy (RFC §9) was never actually built — execute_code is non-functional under airgap

  openscientist-io/openscientist#218 · Filter by author justaddcoffee opened on Jul 9, 2026

• feat(airgap): add AirgapClaudeCodeAgent (Claude Agent SDK support)

  openscientist-io/openscientist#216 · Filter by author justaddcoffee opened on Jul 9, 2026
  1

• Links in "Documentation" section of README.md file are broken

  openscientist-io/openscientist#198 · Filter by author eecavanna opened on Jul 2, 2026
  1

• make start fails with 'invalid hostPort' due to inline comment in .env

  openscientist-io/openscientist#193 · Filter by author justaddcoffee opened on Jun 6, 2026

• Add gene set analysis skills

  openscientist-io/openscientist#192 · Filter by author cmungall opened on Jun 3, 2026

• Enable users to vibe-code and add custom Agent skills

  openscientist-io/openscientist#189 · Filter by author justaddcoffee opened on Jun 1, 2026

• Executor/base image floats claude-agent-sdk version instead of pinning to uv.lock (non-reproducible builds)

  openscientist-io/openscientist#179 · Filter by author justaddcoffee opened on May 29, 2026