Issues

• Adopt OncoRef annotation-scoped CTA identities for admission, self-reference and native replay

  openvax/vaxrank#592 · Filter by author iskandr opened on Oct 7, 2026

• Persist effective modality assembly settings and actual products for complete native replay

  openvax/vaxrank#589 · Filter by author iskandr opened on Oct 7, 2026

• Adopt the mhctools documentation style

  openvax/vaxrank#561 · Filter by author iskandr opened on Oct 2, 2026

• deploy.sh --dry-run can commit and push a version bump

  openvax/vaxrank#560 · Filter by author iskandr opened on Oct 2, 2026

• examples/osteosarc_read_corpus: still wanted? plus resume invalidated by version/path churn and a 13-version-stale README

  openvax/vaxrank#532 · Filter by author iskandr opened on Sep 27, 2026

• Plan: rank DNA-only variants using optional expression evidence (patient bulk, or tissue/cancer-type proxy from oncoref)

  openvax/vaxrank#529 · Filter by author iskandr opened on Sep 27, 2026
  2

• Coordinate concurrent same-version deployments before building release artifacts

  openvax/vaxrank#524 · Filter by author iskandr opened on Sep 26, 2026

• Build Sid read cohorts as subsets of the shared OpenVax union panel (iskandr/osteosarc#56)

  openvax/vaxrank#522 · Filter by author iskandr opened on Sep 26, 2026
  1

• CI dependency install can miss a just-published sibling release

  openvax/vaxrank#513 · Filter by author iskandr opened on Sep 24, 2026

• Remove hasattr/signature tests that stand in for the behavior they describe

  openvax/vaxrank#495 · Filter by author iskandr opened on Sep 21, 2026

• Report tests assert len(contents.split()) > 0, which is always true; plus duplicated and echo-only config tests

  openvax/vaxrank#494 · Filter by author iskandr opened on Sep 21, 2026
  1

• Use repository-relative source paths in visualization manifests

  openvax/vaxrank#472 · Filter by author iskandr opened on Sep 16, 2026

• Update CI cache action for Node 24 and avoid matrix save collisions

  openvax/vaxrank#470 · Filter by author iskandr opened on Sep 16, 2026

• Output path handling is spread across ten writers; bad paths fail only after the full run

  openvax/vaxrank#465 · Filter by author iskandr opened on Sep 16, 2026

• Two different rules decide which args are internal; the report and the run summary can disagree

  openvax/vaxrank#464 · Filter by author iskandr opened on Sep 16, 2026

• Help and summary accuracy: isovar defaults print as None, undocumented --log-path default, incomplete --print-default-config

  openvax/vaxrank#462 · Filter by author iskandr opened on Sep 15, 2026

• weasyprint PDF backend clips report tables off the right edge (loses the WT IC50 column)

  openvax/vaxrank#461 · Filter by author iskandr opened on Sep 15, 2026

• Console logging: everything on stdout, tqdm bar in non-TTY runs, object reprs at INFO, VCF parsed twice

  openvax/vaxrank#460 · Filter by author iskandr opened on Sep 15, 2026

• XLSX/CSV number hygiene: scores written as text, unnamed index column, full-precision VAF, chr/pos vs contig/start

  openvax/vaxrank#459 · Filter by author iskandr opened on Sep 15, 2026

• ASCII report: vaccine-construction rows run together, scores print as 0.000, manufacturability as 17-digit floats

  openvax/vaxrank#458 · Filter by author iskandr opened on Sep 15, 2026

• pdfkit is still the default PDF backend; #217 was closed without finishing the switch

  openvax/vaxrank#452 · Filter by author iskandr opened on Sep 14, 2026

• Finished work orders live in the repo root and ship in the sdist

  openvax/vaxrank#450 · Filter by author iskandr opened on Sep 14, 2026

• Replace deprecated license classifier with SPDX package metadata

  openvax/vaxrank#446 · Filter by author iskandr opened on Sep 14, 2026

• Audit and safety APIs are library-only: ~5,100 lines with no CLI path

  openvax/vaxrank#445 · Filter by author iskandr opened on Sep 14, 2026

• Sid selection draft must not infer construct modality from a provider display label

  openvax/vaxrank#441 · Filter by author iskandr opened on Sep 10, 2026
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