iSEE everything

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41 repositories

iSEEu
Public
The iSEE Universe
hacktoberfest
R
•
MIT License
•7•9•1•2•Updated Dec 1, 2025Dec 1, 2025
iSEE
Public
R/shiny interface for interactive visualization of data in SummarizedExperiment objects
visualization gui shiny clustering gene-expression feature-extraction transcriptomics single-cell hacktoberfest dimension-reduction
R
•
Other
•43•228•31•1•Updated Nov 16, 2025Nov 16, 2025
iSEE.github.io
Public
Quarto website
bioconductor hacktoberfest isee
CSS
•0•0•20•0•Updated Nov 15, 2025Nov 15, 2025
iSEEWorkshopEuroBioc2025
Public
Workshop on iSEE for EuroBioc2025
TeX
•
Other
•1•1•0•0•Updated Oct 2, 2025Oct 2, 2025
iUSEiSEE
Public
A workshop to learn how to use the iSEE package
TeX
•
Other
•0•1•0•1•Updated Oct 1, 2025Oct 1, 2025
iSEEid
Public
R
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Other
•0•2•0•1•Updated Jul 31, 2025Jul 31, 2025
shinylive-iSEE
Public
Demonstration of shinylive for running iSEE
R
•0•1•1•0•Updated Jun 1, 2025Jun 1, 2025
iSEEhub
Public
Custom landing page for iSEE and the Bioconductor ExperimentHub
bioconductor hacktoberfest isee bioconductor-package
R
•0•3•0•0•Updated Feb 13, 2025Feb 13, 2025
iSEEde
Public
iSEE extension for panels related to differential expression analysis
bioconductor hacktoberfest iseeu
R
•1•1•4•0•Updated Nov 3, 2024Nov 3, 2024
iSEEhex
Public
iSEE extension for summarising data points in hexagonal bins
bioconductor shiny-r iseeu
R
•0•0•2•0•Updated Oct 18, 2024Oct 18, 2024
iSEEindex
Public
iSEE extension for a landing page to a custom collection of data sets
bioconductor hacktoberfest
R
•5•2•3•0•Updated Oct 18, 2024Oct 18, 2024
iSEEpathways
Public
iSEE extension for panels related to pathway analysis
bioconductor hacktoberfest isee iseeu
R
•0•2•0•0•Updated Oct 16, 2024Oct 16, 2024
iSEEverse
Public
Easily install and load the entire iSEEverse
R
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Other
•0•0•0•0•Updated Sep 11, 2024Sep 11, 2024
iSEEtheTeam
Public
R
•
Other
•0•1•0•0•Updated Sep 6, 2024Sep 6, 2024
iSEEDemoEuroBioC2024
Public
Package demo for the European Bioconductor Meeting 2024 (Oxford, UK)
workshop bioconductor
CSS
•
Other
•0•1•0•0•Updated Sep 5, 2024Sep 5, 2024
awesome-isee-apps
Public
List of known iSEE apps publicly deployed
0•0•0•0•Updated Apr 9, 2024Apr 9, 2024
iSEElogin
Public
iSEE extension for a landing page presenting a login form
R
•0•0•0•0•Updated Apr 8, 2024Apr 8, 2024
usage
Public
Usage statistics
R
•0•0•0•0•Updated Nov 21, 2023Nov 21, 2023
iSEEdemo
Public
Dockerfile
•
Other
•0•1•0•0•Updated Nov 14, 2023Nov 14, 2023
iSEETheBook
Public
bioconductor isee
TeX
•0•0•1•0•Updated Oct 25, 2023Oct 25, 2023
iSEEDemoEuroBioC2023
Public
iSEE package demo at EuroBioC2023
Dockerfile
•
Other
•0•1•0•0•Updated Sep 12, 2023Sep 12, 2023
shinyappsio-iSEEindex-demo
Public
Demonstration app for iSEEindex on ShinyApps.io
R
•0•1•0•0•Updated Jun 16, 2023Jun 16, 2023
iSEEWorkshop2020
Public
Workshop on interactive analysis of SummarizedExperiment objects with iSEE
TeX
•
Creative Commons Attribution Share Alike 4.0 International
•5•10•3•1•Updated May 19, 2023May 19, 2023
iSEE_instances
Public
A gallery-repository to store the commands to reproduce entire analyses for iSEE instances on public/own data
0•4•0•1•Updated Apr 5, 2023Apr 5, 2023
iSEEWorkshopEuroBioc2020
Public
Workshop on interactive analysis of SummarizedExperiment objects with iSEE for EuroBioc2020
workshop bioconductor isee pkgdown iseeu
CSS
•
Creative Commons Attribution Share Alike 4.0 International
•1•0•2•1•Updated Dec 31, 2022Dec 31, 2022
screenshots
Public
Generate screenshots for iSEE documentation
Dockerfile
•0•0•0•1•Updated Nov 24, 2022Nov 24, 2022
iSEEBase
Public
iSEEBase: Base functions and classes for iSEE
R
•0•0•0•0•Updated Oct 10, 2022Oct 10, 2022
iSEEGenerics
Public
Defines S4 generic functions used in iSEE
isee bioconductor-package iseeu
R
•0•0•0•0•Updated Oct 9, 2022Oct 9, 2022
iSEEwidgets
Public
Shiny widgets developed for iSEE
hacktoberfest
R
•0•0•0•0•Updated Oct 9, 2022Oct 9, 2022
iSEEdebug
Public
Repositories of scripts to investigate and debug issues in iSEE apps.
R
•0•0•0•0•Updated Oct 4, 2022Oct 4, 2022