Sample ID and filter update #414
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Modify FILTER header line to add optional Target=<SUBSET of Variant,Genotype, and Sample> Required for Sample filters. |
yfarjoun
changed the title
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See also htsget PR #430 which ran into some difficulty over the question of whether commas may appear in sample names. |
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should this modify 4.2 or only 4.3? |
jmarshall
reviewed
Nov 4, 2019
| In the \verb!SAMPLE! line: | ||
| \begin{itemize} | ||
| \item{ID} is a string that identifies the sample. | ||
| It comprises non-whitespace characters and doesn't include the comma (`.') character. |
yfarjoun
commented
Nov 4, 2019
| ##META=<ID=Ethnicity,Type=String,Number=.,Values=[AFR, CEU, ASN, MEX]> | ||
| ##META=<ID=Tissue,Type=String,Number=.,Values=[Blood, Breast, Colon, Lung, ?]> | ||
| ##SAMPLE=<ID=Sample1,Assay=WholeGenome,Ethnicity=AFR,Disease=None,Description="Patient germline genome from unaffected",DOI=url> | ||
| ##SAMPLE=<ID=Sample2,Assay=Exome,Ethnicity=CEU,Disease=Cancer,Tissue=Breast,Description="European patient exome from breast cancer"> |
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need to add FILTER to the line itself.
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