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Wilcoxon refactor#636

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Intron7 wants to merge 6 commits intomainfrom
wilcoxon-refactor
Draft

Wilcoxon refactor#636
Intron7 wants to merge 6 commits intomainfrom
wilcoxon-refactor

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@Intron7
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@Intron7 Intron7 commented Apr 24, 2026

Implement a better GPU accelerated version of wilcoxon in rapids-singlecell inspired by the super fast illico verison.

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codecov-commenter commented Apr 24, 2026

Codecov Report

❌ Patch coverage is 83.33333% with 117 lines in your changes missing coverage. Please review.
✅ Project coverage is 86.40%. Comparing base (110290e) to head (f69f1d8).

Files with missing lines Patch % Lines
...s_singlecell/tools/_rank_genes_groups/_wilcoxon.py 80.13% 91 Missing ⚠️
...apids_singlecell/tools/_rank_genes_groups/_core.py 87.05% 18 Missing ⚠️
...ds_singlecell/tools/_rank_genes_groups/__init__.py 95.12% 4 Missing ⚠️
...pids_singlecell/tools/_rank_genes_groups/_utils.py 82.60% 4 Missing ⚠️
Additional details and impacted files
@@            Coverage Diff             @@
##             main     #636      +/-   ##
==========================================
- Coverage   88.04%   86.40%   -1.64%     
==========================================
  Files          96       96              
  Lines        7032     7604     +572     
==========================================
+ Hits         6191     6570     +379     
- Misses        841     1034     +193     
Files with missing lines Coverage Δ
...ecell/tools/_rank_genes_groups/_wilcoxon_binned.py 80.38% <ø> (-0.37%) ⬇️
...ds_singlecell/tools/_rank_genes_groups/__init__.py 89.14% <95.12%> (+6.69%) ⬆️
...pids_singlecell/tools/_rank_genes_groups/_utils.py 60.63% <82.60%> (-25.28%) ⬇️
...apids_singlecell/tools/_rank_genes_groups/_core.py 74.85% <87.05%> (-16.64%) ⬇️
...s_singlecell/tools/_rank_genes_groups/_wilcoxon.py 82.08% <80.13%> (-15.54%) ⬇️

... and 2 files with indirect coverage changes

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2 participants