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@LucaMarconato LucaMarconato commented Dec 15, 2025

  • Support for pandas 3.0. Currently uses the latest anndata and geopandas from GitHub main (they are not released yet).
  • Restore test against pre-release versions, and ensure support for all of them. Specifically:
 - colorcet==3.1.0
 + colorcet==3.1.1a1
 - pandas==2.3.3
 + pandas==3.0.0rc0
 - pytz==2025.2
 - scikit-image==0.25.2
 + scikit-image==0.26.0rc1
 - scipy==1.16.3
 + scipy==1.17.0rc1
  • Improve uv support for pre-release versions.
  • Bump min Python to 3.12.

@LucaMarconato
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The pre-release job should fail with a few hundreds red tests. Most of them fail with the latest geopandas geopandas-1.1.1, but are green with the latest geopandas main.

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codecov bot commented Dec 15, 2025

Codecov Report

❌ Patch coverage is 87.50000% with 1 line in your changes missing coverage. Please review.
✅ Project coverage is 92.12%. Comparing base (53b9438) to head (1768e7e).
⚠️ Report is 2 commits behind head on main.

Files with missing lines Patch % Lines
src/spatialdata/models/models.py 50.00% 1 Missing ⚠️
Additional details and impacted files
@@           Coverage Diff           @@
##             main    #1034   +/-   ##
=======================================
  Coverage   92.11%   92.12%           
=======================================
  Files          49       49           
  Lines        7537     7541    +4     
=======================================
+ Hits         6943     6947    +4     
  Misses        594      594           
Files with missing lines Coverage Δ
src/spatialdata/_core/operations/rasterize_bins.py 93.79% <100.00%> (ø)
src/spatialdata/_io/io_shapes.py 94.66% <100.00%> (+0.30%) ⬆️
src/spatialdata/models/models.py 88.57% <50.00%> (ø)
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@LucaMarconato LucaMarconato marked this pull request as ready for review December 16, 2025 14:12
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2 participants