Raised lower pin for zarr to >=3.0.0 (#1075)

* raised lower pin for zarr to >=3.0.0

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

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Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>

Author: timtreis

pyproject.toml

@@ -63,15 +63,15 @@ dependencies = [
   "scikit-image>=0.25",
   # due to https://github.com/scikit-image/scikit-image/issues/6850 breaks rescale ufunc
   "scikit-learn>=0.24",
-  "spatialdata>=0.2.5",
+  "spatialdata>=0.6",
   "spatialdata-plot",
   "statsmodels>=0.12",
   # https://github.com/scverse/squidpy/issues/526
   "tifffile!=2022.4.22",
   "tqdm>=4.50.2",
   "validators>=0.18.2",
   "xarray>=2024.10",
-  "zarr>=2.6.1",
+  "zarr>=3",
 ]
 
 optional-dependencies.dev = [