Alleles and linkage information to estimate range of compatible haplotypes
This is the minimal working example with the initial example from Nick sent in 2015.
./bin/testhaplo simply gives bounds for all compatible haplotypes, and is being launched many times by the haploscanner.py master script.
Master script calculates haplo-boundaries for the original input data and then moves on the scanning procedure: fix haplotype frequency within the determined complatible range and recaluclate other boundaries accordingly.