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PyDeface

A tool to remove facial structure from MRI images.

Dependencies:

Package Tested version
FSL 6.0.7.18
Python 3 3.14.3
NumPy 2.4.2
NiBabel 5.3.2
Nipype 1.11.0

Installation

pip install pydeface

or

git clone https://github.com/poldracklab/pydeface.git
cd pydeface
pip install .

How to use

pydeface infile.nii.gz

Also see the help for additional options:

pydeface --help

License

PyDeface is licensed under MIT license.

About

Additions to pydeface: 1. Put mean_reg2mean and facemask into MNI standard space, default to MNI space. 2. Use skull-stripped brains for registration.

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