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Update Helm Chart #121
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Update Helm Chart #121
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,11 @@ | ||
| Elixir Cloud TRS-Filer is being deployed! | ||
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| Once deployed: | ||
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| 1. Access the API via https://{{ .Values.host_name }}/ga4gh/trs/v2/ | ||
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| To test the connection, you can run: | ||
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| curl -X GET "https://{{ .Values.host_name }}/ga4gh/trs/v2/service-info" -H "Accept: application/json" | ||
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| 2. Access the Swagger UI via https://{{ .Values.host_name }}/ga4gh/trs/v2/ui |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,45 @@ | ||
| apiVersion: v1 | ||
| kind: ConfigMap | ||
| metadata: | ||
| name: mongo-init-script | ||
| data: | ||
| init-script.js: | | ||
| db = db.getSiblingDB('trsStore'); | ||
| // https://github.com/elixir-cloud-aai/trs-filer/blob/9116b702bce2ef5b2e04130a6fe5db2a89d465f3/trs_filer/gunicorn.py#L26 | ||
| // If not set in values.yaml, it will use trs-filer-db | ||
| dbTRS = db.getSiblingDB('{{ tpl (default "trs-filer-db" .Values.mongodb.dbName) . }}'); | ||
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| // Create the 'tools', 'service_info' and 'toolclasses' collections | ||
| // Database configuration from https://github.com/elixir-cloud-aai/trs-filer/blob/9116b702bce2ef5b2e04130a6fe5db2a89d465f3/trs_filer/config.yaml#L9 | ||
| db.createCollection('tools'); | ||
| db.tools.createIndex( | ||
| { id: 1 }, | ||
| { unique: true } | ||
| ); | ||
| db.createCollection('service_info'); | ||
| db.service_info.createIndex( | ||
| { id: 1 }, | ||
| { unique: true } | ||
| ); | ||
| db.createCollection('toolclasses'); | ||
| db.toolclasses.createIndex( | ||
| { id: 1 }, | ||
| { unique: true } | ||
| ); | ||
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| dbTRS.createCollection('tools'); | ||
| dbTRS.tools.createIndex( | ||
| { id: 1 }, | ||
| { unique: true } | ||
| ); | ||
| dbTRS.createCollection('service_info'); | ||
| dbTRS.service_info.createIndex( | ||
| { id: 1 }, | ||
| { unique: true } | ||
| ); | ||
| dbTRS.createCollection('toolclasses'); | ||
| dbTRS.toolclasses.createIndex( | ||
| { id: 1 }, | ||
| { unique: true } | ||
| ); | ||
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,29 @@ | ||
| {{ if .Values.trs_filer.ingress.enabled }} | ||
| apiVersion: networking.k8s.io/v1 | ||
| kind: Ingress | ||
| metadata: | ||
| annotations: | ||
| {{- if .Values.trs_filer.ingress.https.enabled }} | ||
| cert-manager.io/cluster-issuer: {{ .Values.trs_filer.ingress.https.issuer }} | ||
| kubernetes.io/tls-acme: "true" | ||
| {{- end }} | ||
| name: {{ .Values.trs_filer.appName }}-ingress | ||
| spec: | ||
| rules: | ||
| - host: {{ .Values.host_name }} | ||
| http: | ||
| paths: | ||
| - path: / | ||
| pathType: Prefix | ||
| backend: | ||
| service: | ||
| name: {{ .Values.trs_filer.appName }} | ||
| port: | ||
| number: 8080 | ||
| {{- if .Values.trs_filer.ingress.https.enabled }} | ||
| tls: | ||
| - hosts: | ||
| - {{ .Values.host_name }} | ||
| secretName: {{ .Values.trs_filer.appName }}-ingress-secret | ||
| {{- end }} | ||
| {{ end }} |
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issue (bug_risk): Repeated collection/index creation may cause errors if collections already exist.
Consider adding checks to ensure collections and indexes are only created if they do not already exist, or handle errors to prevent failures on repeated deployments.